Adjoint Refactor Phase 2

[tylerflex]

Why?

• Fix issues where JaxX methods inherited from td.X components ignore input_structures, output_monitors eg. JaxSimulation.epsilon ignores input_structures #1459
• Simplify internal handling of Jax-traced structures and monitors
  • simpler accounting for how many of each type of monitor, structure.
  • simplify conversion from JaxSimulation to Simulation

Goals

• JaxSimulation methods inherited from Simulation work without patching (eg .plot())
• make web API support JaxSimulation upload directly.
• eliminate need for separate JaxInfo file upload.

Strategy

• Validate input_structures to make a td.Structure copy and append it to JaxSimulation.structures.
• Validate output_monitors to make a td.Monitor copy and append it to JaxSimulation.monitors.
• Similarly, add MonitorData from output_monitors to the JaxSimulationData.data tuple so it's accessible there.
• Remove patching for JaxSimulationMethods
• Simplify JaxSimulation.to_simulation() (just remove extraneous fields eg. output_monitors and input_structures and type-cast).
• Simplify conversion from JaxSimulationData to adjoint JaxSimulation.
• Make JaxSimulation upload able through web API, simplify the tda.web internals.
• Remove JaxInfo from code, if possible.

If possible.

• Remove need for separate JaxStructureStaticX, allow mixing of jax and regular types.