[Bug]: Extracted code field may be missing content

[AnalogJ]

Contact Details

No response

What happened?

The code database column is populated as [] because the documented code is blank (only Text is provided).

Flavor

Docker

Version

No response

Relevant log output

{
    "resourceType": "AllergyIntolerance",
    "id": "43ZU.9YY0T8NvTsQACfdhbr8O-rmXUqHNcKTL-UEyYI",
    "meta": {
        "lastUpdated": "2023-01-30T17:58:43.000-05:00",
        "profile": [
            "http://hl7.org/fhir/us/core/StructureDefinition/us-core-allergyintolerance"
        ]
    },
    "text": {
        "status": "generated",
        "div": "\u003cdiv xmlns=\"http://www.w3.org/1999/xhtml\"\u003e\u003ctable border=\"1\"\u003e\u003ctbody\u003e\u003ctr\u003e\u003ctd\u003eStatus\u003c/td\u003e\u003ctd\u003e\u003cspan\u003eactive\u003c/span\u003e\u003c/td\u003e\u003c/tr\u003e\u003cspan\u003e\u003ctr\u003e\u003cspan\u003e\u003ctd\u003eAllergyIntolerance Name\u003c/td\u003e\u003ctd\u003e\u003cspan\u003emilk (May be Milk-related Compounds)\u003c/span\u003e\u003c/td\u003e\u003c/span\u003e\u003c/tr\u003e\u003c/span\u003e  \u003c!-- \u003ctr th:if=\"${resource.onset instanceof org.hl7.fhir.r4.model.DateTimeType}\"\u003e\u003ctd\u003eAllergyIntolerance date\u003c/td\u003e\u003ctd\u003e\u003cspan th:text=\"${#dates.format(resource.onsetDateTime.value,'dd MMMM yyyy')}\"\u003e\u003c/span\u003e\u003c/td\u003e\u003c/tr\u003e --\u003e\u003c/tbody\u003e\u003c/table\u003e\u003c/div\u003e"
    },
    "clinicalStatus": {
        "coding": [
            {
                "system": "http://terminology.hl7.org/CodeSystem/allergyintolerance-clinical",
                "code": "active",
                "display": "Active"
            }
        ],
        "text": "Active"
    },
    "verificationStatus": {
        "coding": [
            {
                "system": "http://terminology.hl7.org/CodeSystem/allergyintolerance-verification",
                "code": "confirmed",
                "display": "Confirmed"
            }
        ],
        "text": "Confirmed"
    },
    "code": {
        "text": "milk (May be Milk-related Compounds)"
    },
    "patient": {
        "reference": "Patient/43ZU.9YY0T8NvTsQACfdhS-f4GgqOZw6UkUSPcyFzek",
        "type": "Patient"
    },
    "asserter": {
        "reference": "Practitioner/43ZU.9YY0T8NvTsQACfdhe5TMNNJZrkIJrpJkYDL3aI",
        "type": "Practitioner"
    }
}

[AnalogJ]

"reaction": [
        {
            "manifestation": [
                {
                    "text": "Side Effects : rash"
                }
            ]
        }
    ]

AllergyIntolerance manifestation is incorrectly set to []

[AnalogJ]

    "onsetDateTime": "2023-01-28T00:00:00-05:00",

Incorrectly parsed as 0001-01-01 00:00:00+00:00?

[AnalogJ]

Just realized that ☝️ may be incorrect, I'm using a database backup from a older version of Fasten that did not have fixes for document extraction