/
Makefile
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/
Makefile
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#
# fairSIM make file
#
# To work, either 'java6' has to point to a java
# compiler (vers. 1.6), or change the line below to
# 'java' instead of 'java6'
JC = javac
JAR = jar
# Options for the java compiler
EXTDIR="./external"
JFLAGS = -g -Xlint:unchecked -Xlint:deprecation -extdirs ./external -d ./
JFLAGS+= -target 1.6 -source 1.6 -bootclasspath ./external/rt-1.6.jar
#JFLAGS+= -release 6
# remove command to clean up
RM = rm -vf
.PHONY: all org/fairsim/git-version.txt
all:
$(JC) $(JFLAGS) org/fairsim/*/*.java
linalg:
$(JC) $(JFLAGS) org/fairsim/linalg/*.java
utils:
$(JC) $(JFLAGS) org/fairsim/utils/*.java
fiji:
$(JC) $(JFLAGS) org/fairsim/fiji/*.java
sim_algorithm:
$(JC) $(JFLAGS) org/fairsim/sim_algorithm/*.java
sim_gui:
$(JC) $(JFLAGS) org/fairsim/sim_gui/*.java
# misc rules
git-version :
git rev-parse HEAD > org/fairsim/git-version.txt ; \
git tag --contains >> org/fairsim/git-version.txt ; \
echo "n/a" >> org/fairsim/git-version.txt
jar: git-version jtransforms-fork
$(JAR) -cfm fairSIM_plugin_$(shell head -c 10 org/fairsim/git-version.txt).jar \
Manifest.txt \
org/fairsim/*/*.class org/fairsim/extern/*/*.class \
org/fairsim/git-version.txt \
org/fairsim/resources/* \
plugins.config
jar-wo-extern: git-version
$(JAR) -cfm fairSIM_woJTransforms_plugin_$(shell head -c 10 org/fairsim/git-version.txt).jar \
Manifest.txt \
org/fairsim/*/*.class \
org/fairsim/git-version.txt \
org/fairsim/resources/* \
plugins.config
# shorthand for extracting the jtransforms-fork is necessary
jtransforms-fork: org/fairsim/extern/jtransforms/FloatFFT_3D.class
org/fairsim/extern/jtransforms/FloatFFT_3D.class:
$(JAR) -xvf external/jtransforms_fairSIM_fork.jar org/fairsim/extern/jtransforms
clean-jtransforms:
$(RM) org/fairsim/external
$(RM) org/fairsim/git-version-jtransforms.txt
# shorthand for generating the doc
doc: doc/index.html
doc/index.html : $(wildcard org/fairsim/*/*.java)
javadoc -d doc/ -classpath ./ -extdirs ${EXTDIR} \
-subpackages org.fairsim -exclude org.fairsim.extern.jtransforms
clean : clean-jtransforms
$(RM) fairSIM_*.jar fairSIM_*.tar.bz2
$(RM) org/fairsim/*/*.class org/fairsim/git-version.txt
$(RM) org/fairsim/extern/*/*.class
$(RM) -r doc/*
$(RM) -r target