/
vigor-omx-config-linux.xml
129 lines (110 loc) · 4.24 KB
/
vigor-omx-config-linux.xml
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<fairsim>
<vigor-settings>
<ControllerAdress type="string">Atana</ControllerAdress>
<TCPPort type="int">32322</TCPPort>
<RawPxlCount type="int">512</RawPxlCount>
<RawPxlSize type="decimal">0.08</RawPxlSize>
<RawPxlSizeZ type="decimal">0.078</RawPxlSizeZ>
<Microscope type="string">fastSIM</Microscope>
<Objective type="string">fastSIM objective</Objective>
<NrPhases type="int">5</NrPhases>
<NrAngles type="int">3</NrAngles>
<NrBands type="int">3</NrBands>
<ReconThreads type="int">2</ReconThreads>
<NetworkBuffer type="int">600</NetworkBuffer>
<DiskBuffer type="int">500</DiskBuffer>
<!-- This is the windows config
<DiskFolder type="string">d:/vigor-tmp/</DiskFolder>
<ParamFolder type="string">d:/vigor-tmp/</ParamFolder>
<RegistrationFolder type="string">d:/vigor-registration/</RegistrationFolder>
-->
<DiskFolder type="string">/vol/ssd-cache/VIGOR-stream</DiskFolder>
<ParamFolder type="string">~/VIGOR-parameters/</ParamFolder>
<RegistrationFolder type="string">~/VIGOR-parameters/registration/</RegistrationFolder>
<SyncMode type="int">1</SyncMode>
<SyncFrameFreq type="int">1</SyncFrameFreq>
<SyncFrameAvr type="int">8000</SyncFrameAvr>
<SyncFrameDelay type="int">5000</SyncFrameDelay>
<!-- PER-channel values at startup -->
<channel-568>
<offset type="decimal">200</offset>
<ChannelNumber type="int">568</ChannelNumber>
<CamType type="string">pco.edge 4.2</CamType>
<CamAdress type="string">localhost</CamAdress>
<sim-param>
<nr-angles type="int"> 3 </nr-angles>
<microns-per-pxl type="decimal"> 8.00000e-02 </microns-per-pxl>
<wiener-parameter type="decimal"> 5.00000e-02 </wiener-parameter>
<nr-bands type="int"> 3 </nr-bands>
<img-size-pxl type="int"> 512 </img-size-pxl>
<apodization-cutoff type="decimal"> 2.00000e+00 </apodization-cutoff>
<nr-phases type="int"> 5 </nr-phases>
<img-seq type="string">PZA</img-seq>
<dir-2>
<shift type="decimal"> 1.71167e+02 4.85667e+01 </shift>
<phase-offset type="decimal"> -2.24381e+00 </phase-offset>
<modulations type="decimal"> 1.00000e+00 1.06176e-01 1.50202e-01 </modulations>
</dir-2>
<dir-1>
<shift type="decimal"> -4.47222e+01 -1.72633e+02 </shift>
<phase-offset type="decimal"> -3.03483e-02 </phase-offset>
<modulations type="decimal"> 1.00000e+00 1.59978e-01 1.26954e-01 </modulations>
</dir-1>
<dir-0>
<shift type="decimal"> 1.26656e+02 -1.25144e+02 </shift>
<phase-offset type="decimal"> 1.34859e+00 </phase-offset>
<modulations type="decimal"> 1.00000e+00 1.30427e-01 1.43113e-01 </modulations>
</dir-0>
</sim-param>
<otf2d>
<NA type="decimal"> 1.40000e+00 </NA>
<attenuation>
<FWHM type="decimal"> 1.20000e+00 </FWHM>
<strength type="decimal"> 9.90000e-01 </strength>
</attenuation>
<a-estimate type="decimal"> 3.00000e-01 </a-estimate>
<emission type="int"> 600 </emission>
</otf2d>
</channel-568>
<channel-569>
<offset type="decimal">200</offset>
<ChannelNumber type="int">569</ChannelNumber>
<CamType type="string">pco.edge 4.2</CamType>
<CamAdress type="string">localhost</CamAdress>
<sim-param>
<nr-angles type="int"> 3 </nr-angles>
<microns-per-pxl type="decimal"> 8.00000e-02 </microns-per-pxl>
<wiener-parameter type="decimal"> 5.00000e-02 </wiener-parameter>
<nr-bands type="int"> 3 </nr-bands>
<img-size-pxl type="int"> 512 </img-size-pxl>
<apodization-cutoff type="decimal"> 2.00000e+00 </apodization-cutoff>
<nr-phases type="int"> 5 </nr-phases>
<img-seq type="string">PZA</img-seq>
<dir-2>
<shift type="decimal"> 1.26678e+02 -1.25122e+02 </shift>
<phase-offset type="decimal"> -2.75350e+00 </phase-offset>
<modulations type="decimal"> 1.00000e+00 1.30195e-01 1.03830e-01 </modulations>
</dir-2>
<dir-1>
<shift type="decimal"> -4.46778e+01 -1.72500e+02 </shift>
<phase-offset type="decimal"> 9.23754e-01 </phase-offset>
<modulations type="decimal"> 1.00000e+00 2.01767e-01 1.02040e-01 </modulations>
</dir-1>
<dir-0>
<shift type="decimal"> 1.71167e+02 4.85444e+01 </shift>
<phase-offset type="decimal"> -8.48221e-01 </phase-offset>
<modulations type="decimal"> 1.00000e+00 1.15105e-01 9.82556e-02 </modulations>
</dir-0>
</sim-param>
<otf2d>
<NA type="decimal"> 1.40000e+00 </NA>
<attenuation>
<FWHM type="decimal"> 1.20000e+00 </FWHM>
<strength type="decimal"> 9.90000e-01 </strength>
</attenuation>
<a-estimate type="decimal"> 3.00000e-01 </a-estimate>
<emission type="int"> 525 </emission>
</otf2d>
</channel-569>
</vigor-settings>
</fairsim>