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PPI analysis using STRING R package #12

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sreichl opened this issue Sep 2, 2023 · 0 comments
Open

PPI analysis using STRING R package #12

sreichl opened this issue Sep 2, 2023 · 0 comments
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enhancement New feature or request

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sreichl commented Sep 2, 2023

  • code in macroStim project
  • apply to all provided gene sets (e.g., up regulated)
  • or go beyond and implement "network-based" enrichment analysis using e.g., OMNIPATH testing if genes are closer in the network than random chance / background gene set of expressed genes
@sreichl sreichl self-assigned this Sep 2, 2023
@sreichl sreichl added the enhancement New feature or request label Sep 2, 2023
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