From c4665e3231c65c8f9b0638888e0805d12e1f729e Mon Sep 17 00:00:00 2001
From: Sarah Griffiths <sarah.griffiths@nanoporetech.com>
Date: Wed, 6 Sep 2023 11:40:35 +0000
Subject: [PATCH] tag

---
 CHANGELOG.md         | 2 +-
 nextflow.config      | 2 +-
 nextflow_schema.json | 8 +++++++-
 3 files changed, 9 insertions(+), 3 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 8d69d0c..b7b57be 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -4,7 +4,7 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [unreleased]
+## [v0.5.1]
 ### Added
 - Additionally output plannotate annotations as a GenBank (`.gbk`) file.
 ### Removed
diff --git a/nextflow.config b/nextflow.config
index 6a5c734..a20ea69 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -59,7 +59,7 @@ manifest {
     description     = 'De-novo reconstruction of synthetic plasmid sequences.'
     mainScript      = 'main.nf'
     nextflowVersion = '>=23.04.2'
-    version         = 'v0.5.0'
+    version         = 'v0.5.1'
 }
 
 executor {
diff --git a/nextflow_schema.json b/nextflow_schema.json
index 7951148..8be5448 100644
--- a/nextflow_schema.json
+++ b/nextflow_schema.json
@@ -46,6 +46,7 @@
                 "analyse_unclassified": {
                     "type": "boolean",
                     "title": "Analyse unclassified reads",
+                    "default": false,
                     "description": "Analyse unclassified reads from input directory. By default the workflow will not process reads in the unclassified directory.",
                     "help_text": "If selected and if the input is a multiplex directory the workflow will also process the unclassified directory."
                 },
@@ -150,12 +151,14 @@
                 },
                 "min_barcode": {
                     "type": "integer",
+                    "default": 0,
                     "title": "Minimum barcode",
                     "description": "Minimum numeric sample barcode ID to process.",
                     "help_text": "If multiplexed data is provided, this filter can be used to exclude certain samples from processing."
                 },
                 "max_barcode": {
                     "type": "integer",
+                    "default": 192,
                     "title": "Maximum barcode",
                     "description": "Maximum (inclusive) numeric sample barcode ID to process.",
                     "help_text": "If multiplexed data is provided, this filter can be used to exclude certain samples from processing."
@@ -232,16 +235,19 @@
                     "type": "boolean",
                     "description": "Display help text.",
                     "fa_icon": "fas fa-question-circle",
-                    "hidden": true
+                    "hidden": true,
+                    "default": false
                 },
                 "version": {
                     "type": "boolean",
+                    "default": false,
                     "description": "Display version and exit.",
                     "fa_icon": "fas fa-question-circle",
                     "hidden": true
                 },
                 "disable_ping": {
                     "type": "boolean",
+                    "default": false,
                     "description": "Enable to prevent sending a workflow ping."
                 }
             }