All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
- The name of the column with run IDs from
run_idstorun_id.
- A column with sequencing run IDs to the output summary CSV files.
- Minor formatting changes of github issue template.
- Overestimation of kbases mapped values.
- Target coverage plots showing only one sample.
- Memory and CPU requirements for each process.
- Documentation updated to new format.
- Bumped minimum required Nextflow version to '>=23.04.2'
- Publish target coverage output to output directory.
- Enum choices are enumerated in the --help output.
- Enum choices are enumerated as part of the error message when a user has selected an invalid choice.
- Inputs file names and directories can now contain spaces.
- Replaced --threads option in fastqingress with hardcoded values to remove warning about undefined
param.threads. - Handling for file and directory names that contain spaces.
- Bumped minimum required Nextflow version to 22.10.8
- Incompatible default memory options
- Configuration for running demo data in AWS
- Generation report with ezcharts
- Memory issue in background calculation with large number of samples
- sample_sheet format in schema to expect a file
- Updated description in manifest
- Docs
- schema and config for using with new Labs Launcher
- Output target summary csv
- Fastqingress metadata map
- Better help text on cli
- Replace pomoxis/stas_from_bam with fastcat/bamstats
- sample_summary.csv with per-sample summary statistics
- Added sequence summary plots into tabs
- Minor report formatting
- New docs format
- No display of plots by default. Use --full_report flag to display
- Merge samples from into single target summary table
- Incorrect values in target summary table
- Errors caused by cases where target had no reads mapping
- First version of wf-cas9 workflow