Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add option for bandage plots in report #30

Open
osilander opened this issue Mar 13, 2024 · 0 comments
Open

Add option for bandage plots in report #30

osilander opened this issue Mar 13, 2024 · 0 comments

Comments

@osilander
Copy link

Is your feature related to a problem?

Not related to a problem

Describe the solution you'd like

An option (or default) to output the gfa file and a Bandage plot of the gfa file for a quick visual summary of the assemblies (perhaps in the full summary report). Alternatively, just the Bandage plot.

Describe alternatives you've considered

I've tried copying and renaming the assembly_graph.gfa output files from flye into the output dir, as it's possible to then make the Bandage plot. The .gfa files in the work directory aren't named by barcode so it's not possible to take them from there.

Additional context

No response

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Development

No branches or pull requests

1 participant