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Marksuh search with bingo postgreSQL #1902

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Vihuhol18 opened this issue Apr 4, 2024 · 0 comments
Open

Marksuh search with bingo postgreSQL #1902

Vihuhol18 opened this issue Apr 4, 2024 · 0 comments

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@Vihuhol18
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Vihuhol18 commented Apr 4, 2024

Steps to Reproduce

  1. PostgreSQL 15.4 Bingo 1.9.1.587-g0e3666ae7
  2. select * from structures where smiles@('C1C(*)=CC(*)=CC=1 |$;;X_p;;;Q_e;;$|', '')::bingo.sub

Expected behavior
Fast request processing speed close to processing with * (select * from structures where smiles@('C1C(*)=CC(*)=CC=1', '')::bingo.sub)

Actual behavior
Slow query execution. Searching for 10 Markush structures takes about a minute. Searching 10,000 structures with * takes about 30 seconds

Environment details:
x86_64-pc-linux-gnu, compiled by gcc (Debian 10.2.1-6) 10.2.1 20210110, 64-bit

Additional context
The documentation does not contain an example of a correct query for searching using the Markush structure
https://lifescience.opensource.epam.com/bingo/user-manual-oracle.html#queries

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