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jupyter-org-client.el
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jupyter-org-client.el
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;;; jupyter-org-client.el --- Org integration -*- lexical-binding: t -*-
;; Copyright (C) 2018-2024 Nathaniel Nicandro
;; Author: Nathaniel Nicandro <nathanielnicandro@gmail.com>
;; Created: 02 Jun 2018
;; This program is free software; you can redistribute it and/or
;; modify it under the terms of the GNU General Public License as
;; published by the Free Software Foundation; either version 3, or (at
;; your option) any later version.
;; This program is distributed in the hope that it will be useful, but
;; WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
;; General Public License for more details.
;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs; see the file COPYING. If not, write to the
;; Free Software Foundation, Inc., 59 Temple Place - Suite 330,
;; Boston, MA 02111-1307, USA.
;;; Commentary:
;; A subclass of a Jupyter kernel client that integrates with `org-mode'
;; src-blocks.
;;; Code:
(eval-when-compile (require 'subr-x))
(require 'jupyter-repl)
(require 'ob)
(declare-function org-babel-python-table-or-string "ob-python" (results))
(declare-function org-babel-jupyter-initiate-session "ob-jupyter" (&optional session params))
(declare-function org-babel-jupyter-src-block-session "ob-jupyter" ())
(declare-function org-babel-jupyter-session-initiated-p "ob-jupyter" (params))
(declare-function org-babel-jupyter-language-p "ob-jupyter" (lang))
(declare-function org-element-context "org-element" (&optional element))
(declare-function org-element-create "org-element" (type &optional props &rest children))
(declare-function org-element-type "org-element" (element))
(declare-function org-element-normalize-string "org-element" (s))
(declare-function org-element-at-point "org-element" ())
(declare-function org-element-parse-buffer "org-element" (&optional granularity visible-only))
(declare-function org-element-map "org-element"
(data types fun &optional info first-match no-recursion with-affiliated))
(declare-function org-drag-element-forward "org-element" ())
(declare-function org-element-property "org-element" (property element))
(declare-function org-element-set-contents "org-element" (element &rest contents))
(declare-function org-element-latex-fragment-parser "org-element" ())
(declare-function org-element-latex-environment-parser "org-element" (limit affiliated))
(declare-function org-element-interpret-data "org-element" (data))
(declare-function org-element-put-property "org-element" (element property value))
(declare-function orgtbl-to-orgtbl "org-table" (table params))
(declare-function org-table-align "org-table" ())
(declare-function org-in-src-block-p "org" (&optional inside))
(declare-function org-next-block "org" (arg &optional backward block-regexp))
(declare-function org-at-table-p "org" ())
(declare-function org-inside-LaTeX-fragment-p "org" ())
(declare-function org-latex-preview "org" (&optional arg))
(defcustom jupyter-org-auto-connect t
"Automatically establish a connection to a src-block session.
If this variable is non-nil, then a connection to a src-block
session is automatically established under certain conditions,
e.g. during auto-completion. Otherwise there would have to be an
available connection already if this variable is nil for features
like auto-completion to work.
When this variable is nil, you can establish a connection to a
session by, for example, executing a src-block."
:group 'ob-jupyter
:type 'boolean)
(defcustom jupyter-org-queue-requests nil
"Whether or not source block evaluations should be queued.
When this variable is nil and, for example, multiple source
blocks are executed in rapid succession the underlying
\"execute_request\" messages are sent to the kernel immediately
and are queued on the kernel side so that when one of the source
blocks raises an error, the kernel will typically just execute
the next \"execute_request\" message queued up so the effect is
that source blocks that come after the failed one are executed.
Some may find this behavior undesirable.
Instead, when this variable is non-nil, the \"execute_request\"
messages of the source blocks are queued on the client side and
whenever one of the source blocks raises an error, all of the
queued \"execute_request\" messages are aborted and don't get
sent to the kernel so the effect is that source blocks that come
after the failed one are not executed."
:group 'ob-jupyter
:type 'boolean)
(defcustom jupyter-org-resource-directory "./.ob-jupyter/"
"Directory used to store automatically generated image files.
See `jupyter-org-image-file-name'."
:group 'ob-jupyter
:type 'string)
(defcustom jupyter-org-toggle-latex t
"Whether to automatically display latex fragments or not.
If a source block returns LaTeX fragments, LaTeX images will
automatically be shown if this is non-nil."
:group 'ob-jupyter
:type 'boolean)
(defcustom jupyter-org-pandoc-convertable
'("html" "markdown" "latex")
"Export blocks to convert to `org-mode' when ':pandoc t' header is set."
:group 'ob-jupyter
:type '(repeat string))
(defcustom jupyter-org-adjust-image-size t
"Try to best fit image output in the result block.
If non-nil, and `org-image-actual-width' is set to a list, the
image will not be stretched if its width is smaller than \(car
`org-image-actual-width'\). This is done by inserting an
#+ATTR_ORG keyword above the file path.
See also the docstring of `org-image-actual-width' for more details."
:group 'ob-jupyter
:type 'boolean)
(defconst jupyter-org-mime-types '(:text/org
;; Prioritize images over html
:image/svg+xml :image/jpeg :image/png
:text/html :text/markdown
:text/latex :text/plain)
"MIME types handled by Jupyter Org.")
(defclass jupyter-org-client (jupyter-repl-client)
((most-recent-request
:type (or jupyter-request null)
:initform nil
:initarg :most-recent-request
:documentation "The most recently sent request.")
(last-queued-request
:type (or jupyter-request null)
:initform nil
:initarg :last-queued-request
:documentation "The last queued request.")))
(cl-defstruct (jupyter-org-request
(:include jupyter-request)
(:constructor nil)
(:constructor jupyter-org-request))
result-type
block-params
file
results
silent-p
id-cleared-p
inline-block-p
marker
async-p
overlay)
(defvar org-babel-jupyter-resolving-reference-p)
(defun jupyter-org-execute-async-p (params)
"Return non-nil if an execution should be asynchronous based on PARAMS.
PARAMS are the source block arguments as returned by,
e.g. `org-babel-get-src-block-info'."
(and (member (alist-get :async params) '("yes" nil))
(not org-babel-jupyter-resolving-reference-p)))
;;; `jupyter-kernel-client' interface
;;;; `jupyter-request' interface
(defvar org-babel-jupyter-current-src-block-params)
(defun jupyter-org--make-overlay (beg end &optional inline)
"Create overlay between BEG and END positions and return it."
(let ((overlay (make-overlay beg end)))
(overlay-put overlay 'face 'secondary-selection)
(let ((read-only
(list
(lambda (&rest _)
(user-error
"Cannot modify an area of a source block being executed")))))
(overlay-put overlay 'modification-hooks read-only)
(overlay-put overlay 'insert-in-front-hooks read-only)
(unless inline
(overlay-put overlay 'insert-behind-hooks read-only)))
overlay))
(defun jupyter-org--remove-overlay (req)
(when (overlayp (jupyter-org-request-overlay req))
(delete-overlay (jupyter-org-request-overlay req))))
(cl-defmethod jupyter-generate-request ((_client jupyter-org-client) &rest slots)
"Return a `jupyter-org-request' for the current source code block."
(if (and org-babel-current-src-block-location
org-babel-jupyter-current-src-block-params
(provided-mode-derived-p
(buffer-local-value
;; Handle indirect buffers used by packages like polymode, see #171.
'major-mode (or (buffer-base-buffer) (current-buffer)))
'org-mode))
;; Only use a `jupyter-org-request' when executing code blocks, setting
;; the `major-mode' context isn't enough, consider when a client is
;; started due to sending a completion request.
(save-excursion
(goto-char org-babel-current-src-block-location)
(let* ((context (org-element-context))
(block-params org-babel-jupyter-current-src-block-params)
(result-params (alist-get :result-params block-params))
(req
(apply #'jupyter-org-request
(append
(list
:marker (copy-marker org-babel-current-src-block-location)
:inline-block-p (and (memq (org-element-type context)
'(inline-babel-call inline-src-block))
t)
:result-type (alist-get :result-type block-params)
:file (alist-get :file block-params)
:block-params block-params
:async-p (jupyter-org-execute-async-p block-params)
:silent-p (car (or (member "none" result-params)
(member "silent" result-params))))
slots))))
(put-text-property
org-babel-current-src-block-location
(1+ org-babel-current-src-block-location)
'jupyter-request req)
(setf (jupyter-org-request-overlay req)
(pcase (org-element-type context)
(`src-block
(jupyter-org--make-overlay
(save-excursion
(goto-char (jupyter-org-element-begin-after-affiliated context))
(line-beginning-position 2))
(jupyter-org-element-contents-end context)))
((and type (or `inline-src-block `babel-call `inline-babel-call))
(jupyter-org--make-overlay
(jupyter-org-element-begin-after-affiliated context)
(jupyter-org-element-end-before-blanks context)
(memq type '(inline-src-block babel-call inline-babel-call))))))
req))
(cl-call-next-method)))
(defun jupyter-org-request-at-point ()
"Return the `jupyter-org-request' associated with `point' or nil."
(when-let* ((context (org-element-context))
(babel-p (memq (org-element-type context)
'(src-block babel-call
inline-babel-call inline-src-block)))
(pos (jupyter-org-element-begin-after-affiliated context))
(req (get-text-property pos 'jupyter-request)))
(and (not (jupyter-request-idle-p req))
req)))
;;;; Stream
(cl-defmethod jupyter-handle-stream ((_client jupyter-org-client) (req jupyter-org-request) msg)
(jupyter-with-message-content msg (text)
(if (jupyter-org-request-inline-block-p req)
(jupyter-with-display-buffer "org-results" req
(jupyter-with-insertion-bounds
beg end (insert text)
(ansi-color-apply-on-region beg end))
(jupyter-display-current-buffer-reuse-window))
(jupyter-org--add-result req text))))
;;;; Errors
(defvar jupyter-org-goto-error-map
(let ((map (make-sparse-keymap)))
(define-key map [mouse-2] #'jupyter-org-goto-error)
(define-key map (kbd "RET") #'jupyter-org-goto-error)
map)
"Keymap for jumping to an error in a source code block.")
(defun jupyter-org-goto-error ()
"Go to the error location specified by the jupyter-error-loc text property.
If `point' has a non-nil jupyter-error-loc property, jump to that
line in the previous source block. See
`jupyter-org-error-location'."
(interactive)
(when-let* ((loc (get-text-property (point) 'jupyter-error-loc)))
(with-current-buffer (marker-buffer loc)
(jupyter-display-current-buffer-reuse-window))
(goto-char loc)))
;;;;; `jupyter-org-error-location'
;; Inspiration from https://kitchingroup.cheme.cmu.edu/blog/2017/06/10/Adding-keymaps-to-src-blocks-via-org-font-lock-hook/
(defconst jupyter-org--goto-error-string "[goto error]")
(cl-defgeneric jupyter-org-error-location ()
"Return the line number corresponding to an error from a traceback.
This method is called with `point' at `point-min' in a buffer
containing the traceback of the last error that occurred due to
execution of a source block. It should return the line number
relative to the source block that caused the error or nil if a
line number could not be found."
(ignore))
(defun jupyter-org--goto-error-string (req)
(let* ((buffer (current-buffer))
(loc (org-with-point-at (jupyter-org-request-marker req)
(forward-line (or (with-current-buffer buffer
(save-excursion
(goto-char (point-min))
(jupyter-org-error-location)))
0))
(point-marker))))
(propertize jupyter-org--goto-error-string
'jupyter-error-loc loc
'face 'link
'keymap jupyter-org-goto-error-map)))
(defun jupyter-org-add-error-keymap (limit)
"Add keymaps to text that contain a jupyter-error-loc property.
Search up to LIMIT from `point' for any text to add the keymap
to."
(save-restriction
(narrow-to-region (point) limit)
(let ((pos (point)) end)
(while (setq pos (next-single-property-change pos 'jupyter-error-loc))
(when (get-text-property pos 'jupyter-error-loc)
(setq end (next-single-property-change pos 'jupyter-error-loc))
(put-text-property pos end 'keymap jupyter-org-goto-error-map)
(setq pos end))))))
;;;;; Handler
(defvar org-font-lock-hook)
(cl-defmethod jupyter-handle-error ((_client jupyter-org-client) (req jupyter-org-request) msg)
(jupyter-with-message-content msg (traceback)
(setq traceback (org-element-normalize-string
(mapconcat #'identity traceback "\n")))
(pcase-let (((cl-struct jupyter-org-request
marker inline-block-p silent-p)
req))
(cond
((or inline-block-p silent-p)
;; Remove old inline results when an error happens since, if this was not
;; done, it would look like the code which caused the error produced the
;; old result.
(when inline-block-p
(org-with-point-at marker
(org-babel-remove-inline-result)))
(jupyter-with-display-buffer "traceback" 'reset
(jupyter-insert-ansi-coded-text traceback)
(goto-char (point-min))
(when silent-p
(insert (jupyter-org--goto-error-string req) "\n\n"))
(jupyter-display-current-buffer-reuse-window)))
(t
;; The keymap property in the string returned by
;; `jupyter-org--goto-error-string' gets removed by font-lock so ensure it
;; is re-added.
(unless (memq 'jupyter-org-add-error-keymap org-font-lock-hook)
(add-hook 'org-font-lock-hook 'jupyter-org-add-error-keymap nil t))
(jupyter-org--add-result
req (jupyter-org-comment
(with-temp-buffer
(insert traceback)
(jupyter-org--goto-error-string req))))
(jupyter-org--add-result req traceback))))))
;;;; Execute result
(cl-defmethod jupyter-handle-execute-result ((_client jupyter-org-client) (req jupyter-org-request) msg)
(unless (eq (jupyter-org-request-result-type req) 'output)
(jupyter-with-message-content msg (data metadata)
(when (jupyter-org-request-inline-block-p req)
;; For inline results, only text/plain results are allowed at the moment.
;;
;; TODO: Handle all of the different macro types for inline results, see
;; `org-babel-insert-result'.
(setq data `(:text/plain ,(plist-get data :text/plain))))
(jupyter-org--add-result req data metadata))))
;;;; Display data
(cl-defmethod jupyter-handle-display-data ((_client jupyter-org-client) (req jupyter-org-request) msg)
;; TODO: Add request objects as text properties of source code blocks to
;; implement display IDs. Or how can #+NAME be used as a display ID?
;;
;; Only the data of the execute-result message is inserted into the buffer
;; for inline code blocks.
(jupyter-with-message-content msg (data metadata)
(if (jupyter-org-request-inline-block-p req)
(jupyter-with-display-buffer "org-results" req
(jupyter-insert data metadata)
(jupyter-display-current-buffer-reuse-window)
(set-window-point (get-buffer-window (current-buffer)) (point-min)))
(jupyter-org--add-result req data metadata))))
;;;; Execute reply
(cl-defmethod jupyter-handle-payload ((_source (eql set_next_input)) pl
&context (major-mode org-mode))
;; Assumes `point' is at a src-block element
(let ((src-block (org-element-at-point))
(result-p (org-babel-where-is-src-block-result)))
(save-excursion
(goto-char (jupyter-org-element-end-before-blanks src-block))
(forward-line -1)
;; Create an empty src-block after the current one but before any of the
;; current source block's results
(org-babel-demarcate-block)
(org-next-block 1)
(when result-p
(org-drag-element-forward))
(forward-line)
(insert (org-element-normalize-string (plist-get pl :text))))))
(cl-defmethod jupyter-handle-execute-reply ((_client jupyter-org-client) (req jupyter-org-request) msg)
(jupyter-with-message-content msg (status payload)
(when payload
(org-with-point-at (jupyter-org-request-marker req)
(jupyter-handle-payload payload)))
(jupyter-org--remove-overlay req)
(if (equal status "ok")
(message "Code block evaluation complete.")
(message "An error occurred when evaluating code block."))
(when (jupyter-org-request-async-p req)
(jupyter-org--clear-async-indicator req)
(org-with-point-at (jupyter-org-request-marker req)
(run-hooks 'org-babel-after-execute-hook)))))
;;; Queueing requests
(defun jupyter-org-abort (req)
"Abort REQ.
Set the request as being idle. Remove any indication that REQ is
a running execute_request from the Org buffer. Publish an abort
message down the chain of subscribers to the REQ's message
publisher to indicate that any subsequent, queued, requests
should also be aborted."
(setf (jupyter-request-idle-p req) t)
(let ((client (jupyter-request-client req)))
(when (eq (oref client last-queued-request) req)
(oset client last-queued-request nil)))
(jupyter-org--remove-overlay req)
(jupyter-org--clear-async-indicator req)
(let ((marker (jupyter-org-request-marker req)))
(message (format "Source block execution in %s at position %s canceled"
(buffer-name (marker-buffer marker))
(marker-position marker))))
(with-demoted-errors "Error while aborting subscribers: %S"
(jupyter-run-with-io
(jupyter-request-message-publisher req)
;; Propagate the abort down the chain of queued requests.
(jupyter-publish 'abort)))
(jupyter-unsubscribe))
(defun jupyter-org-maybe-queued (dreq)
"Return a monadic value that either sends or continues to delay DREQ.
DREQ is an already delayed request, as returned by
`jupyter-request' and friends. When the value is bound to a
client, using e.g. `jupyter-run-with-client', send DREQ if there
are no queued requests otherwise queue DREQ. The value returns
the unboxed request contained in DREQ.
If the variable `jupyter-org-queue-requests' is nil, just send
the request immediately instead of attempting to queue it."
(if (not jupyter-org-queue-requests)
(jupyter-sent dreq)
(jupyter-mlet* ((client (jupyter-get-state))
(req dreq))
(let* ((send
(lambda (req)
(jupyter-run-with-client client
(jupyter-mlet* ((req (jupyter-sent
(jupyter-return req))))
(oset client most-recent-request req)
(jupyter-run-with-io
(jupyter-request-message-publisher req)
(jupyter-subscribe
(jupyter-subscriber
(lambda (msg)
(when (or (eq msg 'abort)
(equal (jupyter-message-type msg) "execute_reply"))
(when (eq (oref client most-recent-request) req)
(oset client most-recent-request nil))
(jupyter-unsubscribe))))))
(when (eq (oref client last-queued-request) req)
(oset client last-queued-request nil))
(jupyter-return req)))))
(queue
;; Subscribe REQ to the message publisher of QREQ such that
;; REQ is sent or aborted when QREQ receives an
;; execute_reply.
(lambda (qreq req)
(let ((pub (jupyter-request-message-publisher qreq)))
(jupyter-run-with-io pub
(jupyter-subscribe
(jupyter-subscriber
(lambda (msg)
(if (eq msg 'abort)
(jupyter-org-abort req)
(pcase (jupyter-message-type msg)
("execute_reply"
(jupyter-with-message-content msg (status)
(if (equal status "ok")
(funcall send req)
(jupyter-org-abort req)))
(jupyter-unsubscribe))))))))))))
(let ((mreq (oref client most-recent-request)) qreq)
(cond
((null mreq)
(funcall send req))
((setq qreq (oref client last-queued-request))
(funcall queue qreq req)
(oset client last-queued-request req))
(t
(funcall queue mreq req)
(oset client last-queued-request req)))
(jupyter-return req))))))
;;; Completion in code blocks
(defvar jupyter-org--src-block-cache nil
"A list of three elements (SESSION BEG END).
SESSION is the Jupyter session to use for completion requests for
a code block between BEG and END.
BEG and END are the bounds of the source block which made the
most recent completion request.")
(defsubst jupyter-org--src-block-beg ()
(nth 1 jupyter-org--src-block-cache))
(defsubst jupyter-org--src-block-end ()
(nth 2 jupyter-org--src-block-cache))
(defun jupyter-org--same-src-block-p ()
(when jupyter-org--src-block-cache
(cl-destructuring-bind (_ beg end)
jupyter-org--src-block-cache
(and
(marker-position beg)
(marker-position end)
(<= beg (point) end)))))
(defun jupyter-org--set-current-src-block ()
(unless (jupyter-org--same-src-block-p)
(let* ((el (org-element-at-point))
(lang (org-element-property :language el)))
(when (org-babel-jupyter-language-p lang)
(let* ((info (org-babel-get-src-block-info t el))
(params (nth 2 info))
(beg (save-excursion
(goto-char (org-element-property :post-affiliated el))
(line-beginning-position 2)))
(end (save-excursion
(goto-char (org-element-property :end el))
(skip-chars-backward "\r\n")
(line-beginning-position))))
(unless jupyter-org--src-block-cache
(setq jupyter-org--src-block-cache
(list nil (point-marker) (point-marker)))
;; Move the end marker when text is inserted
(set-marker-insertion-type (nth 2 jupyter-org--src-block-cache) t))
(setf (nth 0 jupyter-org--src-block-cache) params)
(cl-callf move-marker (nth 1 jupyter-org--src-block-cache) beg)
(cl-callf move-marker (nth 2 jupyter-org--src-block-cache) end))))))
(defmacro jupyter-org-when-in-src-block (&rest body)
"Evaluate BODY when inside a Jupyter source block.
Return the result of BODY when it is evaluated, otherwise nil is
returned."
(declare (debug (body)))
`(if (not (org-in-src-block-p 'inside))
;; Invalidate cache when going outside of a source block. This way if
;; the language of the block changes we don't end up using the cache
;; since it is only used for Jupyter blocks.
(when jupyter-org--src-block-cache
(set-marker (nth 1 jupyter-org--src-block-cache) nil)
(set-marker (nth 2 jupyter-org--src-block-cache) nil)
(setq jupyter-org--src-block-cache nil))
(jupyter-org--set-current-src-block)
(when (jupyter-org--same-src-block-p)
,@body)))
(defmacro jupyter-org-with-src-block-client (&rest body)
"Evaluate BODY with `jupyter-current-client' set to the session's client.
A client is initialized if needed when `jupyter-org-auto-connect'
is non-nil. When that variable is nil and no client is present
for the source block, don't evaluate BODY and return nil.
If `point' is not inside the code of a Jupyter source block, BODY
is not evaluated and nil is returned. Return the result of BODY
when it is evaluated.
In addition to evaluating BODY with an active Jupyter client set,
the `syntax-table' will be set to that of the REPL buffer's."
(declare (debug (body)))
(let ((params (make-symbol "params"))
(syntax (make-symbol "syntax"))
(buffer (make-symbol "buffer")))
`(jupyter-org-when-in-src-block
(let ((,params (car jupyter-org--src-block-cache)))
(when (or jupyter-org-auto-connect
(org-babel-jupyter-session-initiated-p ,params))
(let* ((,buffer (org-babel-jupyter-initiate-session
(alist-get :session ,params) ,params))
(jupyter-current-client
(buffer-local-value 'jupyter-current-client ,buffer))
(,syntax (jupyter-kernel-language-syntax-table
jupyter-current-client)))
(with-syntax-table ,syntax
,@body)))))))
(cl-defmethod jupyter-code-context ((_type (eql inspect))
&context (major-mode org-mode))
(when (org-in-src-block-p 'inside)
(jupyter-line-context)))
(cl-defmethod jupyter-code-context ((_type (eql completion))
&context (major-mode org-mode))
;; Always called from within a valid code block. See
;; `jupyter-org-completion-at-point'.
(list (buffer-substring-no-properties
(jupyter-org--src-block-beg)
(jupyter-org--src-block-end))
(- (point) (jupyter-org--src-block-beg))))
(defun jupyter-org-completion-at-point ()
(jupyter-org-with-src-block-client
(jupyter-completion-at-point)))
;;; Inspection
(cl-defmethod jupyter-inspect (&context (major-mode org-mode)
&rest _ignore)
(jupyter-org-with-src-block-client
(cl-call-next-method)))
;;; Key bindings in code blocks
(defvar jupyter-org-interaction-mode-map (make-sparse-keymap))
(defun jupyter-org--key-def (key vect)
"Get KEY's definition, using VECT to lookup the keymap to search.
`jupyter-org-interaction-mode-map' contains keymaps bound to
single element vectors like [jupyter] or [python] which hold the
keybindings available for a particular language, [python], or for
any Jupyter code block, [jupyter]."
(let* ((map (lookup-key jupyter-org-interaction-mode-map vect))
(cmd (and (keymapp map) (lookup-key map key))))
(and (functionp cmd) cmd)))
(defun jupyter-org--define-key-filter (key &rest _)
"Return the definition for KEY when inside a Jupyter src-block or nil."
;; Fall back to regular `org-mode' keys when the current point is invisible,
;; e.g. folded subtrees.
(unless (org-invisible-p)
(jupyter-org-with-src-block-client
(let ((lang (jupyter-kernel-language jupyter-current-client)))
(or (jupyter-org--key-def key `[,lang])
(jupyter-org--key-def key [jupyter]))))))
(defun jupyter-org--call-with-src-block-client (def)
"Call DEF interactively with the current src-block's client."
(jupyter-org-with-src-block-client
(call-interactively def)))
(defvar jupyter-org--defining-key-p nil)
(defun jupyter-org-define-key (key def &optional lang)
"Bind KEY to DEF, but only when inside a Jupyter code block.
When `point' is inside a Jupyter code block, DEF is called using
the `jupyter-current-client' of the session associated with the
code block, see `jupyter-org-with-src-block-client'.
If LANG is non-nil, it is a language symbol such as python or
julia. Only bind KEY to DEF whenever the underlying kernel
language is LANG. If LANG is nil, then KEY is bound to DEF
regardless of kernel language. Note, the same key can be bound
for different kernel languages.
All of the keys are bound in `jupyter-org-interaction-mode-map'
and they only take effect when the variable
`jupyter-org-interaction-mode' is non-nil."
;; From http://endlessparentheses.com/define-context-aware-keys-in-emacs.html
;;
;; But the dynamic keybindings in code blocks is inspired by John Kitchin's
;; extensions to ob-ipython.
(setq lang `[,(or lang 'jupyter)])
(let ((map (or (lookup-key jupyter-org-interaction-mode-map lang)
(define-key jupyter-org-interaction-mode-map lang
(make-sparse-keymap)))))
(define-key map key
(let ((cmd (lambda ()
(interactive)
(jupyter-org--call-with-src-block-client def))))
(if (symbolp def)
(defalias (make-symbol (symbol-name def))
cmd (documentation def))
cmd))))
(let ((jupyter-org--defining-key-p t))
(unless (functionp (lookup-key jupyter-org-interaction-mode-map key))
(define-key jupyter-org-interaction-mode-map key
(list 'menu-item "" nil :filter
(lambda (&rest _)
(if jupyter-org--defining-key-p
;; Stub definition so that `lookup-key' returns a non-nil
;; value since the normal filter only returns a definition
;; when inside a source block. We only need to make the
;; definition for KEY once and not on every re-definition
;; of KEY for a particular language.
#'undefined
(jupyter-org--define-key-filter key))))))))
(jupyter-org-define-key (kbd "C-x C-e") #'jupyter-eval-line-or-region)
(jupyter-org-define-key (kbd "C-M-x") #'jupyter-eval-defun)
(jupyter-org-define-key (kbd "M-i") #'jupyter-inspect-at-point)
(jupyter-org-define-key (kbd "C-c C-r") #'jupyter-repl-restart-kernel)
(jupyter-org-define-key (kbd "C-c C-i") #'jupyter-repl-interrupt-kernel)
;;; Handling ANSI escapes in kernel output
;; NOTE: We cache the properties here since this is called during the font-lock
;; process (and maybe shouldn't be?) which means that it can be called many
;; times on the same region. We don't want to re-compute the faces on each
;; call.
(defun jupyter-org--ansi-color-apply-on-region (begin end)
"Handle ANSI escape codes between (BEGIN . END) and cache the results.
If (BEGIN . END) is not marked with a jupyter-ansi text property,
apply `jupyter-ansi-color-apply-on-region' on the region and mark
it with a non-nil jupyter-ansi property. Otherwise, prepend any
non-nil jupyter-face properties in the region to the face
property."
;; Don't add these changes to the undo list, gives a slight speed up.
(let ((buffer-undo-list t)
(inhibit-modification-hooks t)
next begin1 end1)
(while (/= begin end)
(setq next (next-single-property-change begin 'jupyter-ansi nil end))
(cond
((get-text-property begin 'jupyter-ansi)
(setq begin1 begin
end1 next
begin next)
(while (/= begin1 end1)
(setq next (next-single-property-change
begin1 'jupyter-face nil end1))
(when (get-text-property begin1 'jupyter-face)
(font-lock-prepend-text-property
begin1 next 'face (get-text-property begin1 'jupyter-face)))
(setq begin1 next)))
(t
(put-text-property begin next 'jupyter-ansi t)
(jupyter-ansi-color-apply-on-region begin next 'jupyter-face)
(setq begin next))))))
;; Adapted from `org-fontify-meta-lines-and-blocks-1'
(defun jupyter-org-font-lock-ansi-escapes (limit)
(let ((case-fold-search t))
(when (re-search-forward
"^[ \t]*\\(#\\+begin_example[ \t]*\\|: .*\\)$" limit t)
(let ((beg (match-beginning 1))
(beg1 (line-beginning-position 2))
end)
(cond
;; example block
((not (eq (char-after beg) ?:))
(when (re-search-forward
"^[ \t]*#\\+end_example\\>.*"
nil t) ;; on purpose, we look further than LIMIT
(setq end (min (point-max) (1- (match-beginning 0))))
(jupyter-org--ansi-color-apply-on-region beg1 end)))
;; fixed width
(t
(setq end (or (and (re-search-forward "^[ \t]*[^ \t:]" nil t)
(1- (match-beginning 0)))
(point-max)))
(jupyter-org--ansi-color-apply-on-region beg end)))))))
;;; `jupyter-org-interaction-mode'
(defvar org-font-lock-keywords)
(define-minor-mode jupyter-org-interaction-mode
"Minor mode for interacting with a Jupyter REPL from an `org-mode' buffer.
When this minor mode is enabled, some of the keybindings
available in `jupyter-repl-interaction-mode' are also available
when `point' is inside a Jupyter code block. Completion is also
enabled when `point' is inside a code block.
In addition, ANSI escape sequences in example blocks or
fixed-width elements are fontified.
By default this mode is enabled in every `org-mode' buffer.
key binding
--- -------
C-M-x `jupyter-eval-defun'
M-i `jupyter-inspect-at-point'
C-c TAB `jupyter-repl-interrupt-kernel'
C-c C-r `jupyter-repl-restart-kernel'
C-x C-e `jupyter-eval-line-or-region'"
:group 'ob-jupyter
:init-value nil
(cond
(jupyter-org-interaction-mode
(add-hook 'completion-at-point-functions 'jupyter-org-completion-at-point nil t)
(add-hook 'after-revert-hook 'jupyter-org-interaction-mode nil t)
(setq-local char-property-alias-alist
(copy-tree char-property-alias-alist))
(cl-callf append (alist-get 'invisible char-property-alias-alist)
'(jupyter-invisible))
(unless (cl-find-if
(lambda (x) (eq (car x) 'jupyter-org-font-lock-ansi-escapes))
org-font-lock-keywords)
(cl-callf append org-font-lock-keywords
'((jupyter-org-font-lock-ansi-escapes)))))
(t
(remove-hook 'completion-at-point-functions 'jupyter-org-completion-at-point t)
(remove-hook 'after-revert-hook 'jupyter-org-interaction-mode t)
(cl-callf2 delq 'jupyter-invisible
(alist-get 'invisible char-property-alias-alist))
(cl-callf2 cl-remove-if
(lambda (x) (eq (car x) 'jupyter-org-font-lock-ansi-escapes))
org-font-lock-keywords))))
(add-hook 'org-mode-hook 'jupyter-org-interaction-mode)
;;; Constructing org syntax trees
(defvar org-element-all-objects)
(defvar org-element-all-elements)
(defun jupyter-org-object-p (element)
"Return non-nil if ELEMENT's type is a member of `org-element-all-objects'."
(memq (org-element-type element) org-element-all-objects))
(defun jupyter-org-raw-string-p (str)
"Return non-nil if STR can be inserted as is during result insertion."
(and (stringp str) (get-text-property 0 'jupyter-org str)))
(defun jupyter-org-raw-string (str)
"Return STR, ensuring that it is flagged as already being `org' syntax.
Adds a non-nil jupyter-org text property on the first character
of STR. If a string returned by `jupyter-org-result' has a
non-nil jupyter-org property on the first character, it is
inserted without modification as the result of a code block."
(prog1 str
(put-text-property 0 1 'jupyter-org t str)))
(defun jupyter-org-table-string (str)
"Return STR, ensuring that it is flagged as containing an `org' table.
We need a way to distinguish a table string that is easily
removed from the code block vs a regular string that will need to
be wrapped in a drawer. Used in `jupyter-org-babel-result-p'."
(prog1 (jupyter-org-raw-string str)
(put-text-property 0 1 'org-table t str)))
(defun jupyter-org-comment (value)
"Return a comment `org-element' with VALUE."
(org-element-create 'comment (list :value value)))
(defun jupyter-org-export-block-or-pandoc (type value params)
"Return VALUE, either converted with pandoc or in an export block.
If PARAMS has non-nil value for key ':pandoc' and TYPE is in
`jupyter-org-pandoc-convertable', convert the result with pandoc.
Otherwise, wrap it in an export block."
(if (and (alist-get :pandoc params)
(member type jupyter-org-pandoc-convertable))
(list 'pandoc
(list :text "Converting..."
:type type
:value value))
(jupyter-org-export-block type value)))
(defun jupyter-org-export-block (type value)
"Return an export-block `org-element'.
The block will export TYPE and the contents of the block will be
VALUE."
(org-element-create 'export-block
(list :type type
:value (org-element-normalize-string value))))
(defun jupyter-org-file-link (path)
"Return a file link `org-element' that points to PATH."
(org-element-create 'link (list :type "file" :path path)))
(defun jupyter-org-image-link (path &optional width height)
"Return an `org-element' for an image at PATH.
If a WIDTH or HEIGHT are provided, then return a paragraph
element with an affiliated keyword ATTR_ORG. So that the image
link will be rendered like
#+ATTR_ORG :width 300 :height 300
[[file:<path>]]
Otherwise return a `jupyter-org-file-link' for PATH."
(if (or width height)
(let ((attrs (concat
(when width
(concat ":width " (number-to-string width)))
(when height
(concat (when width " ")
":height " (number-to-string height))))))
(org-element-create 'paragraph (list :attr_org (list attrs))
(jupyter-org-file-link path)
"\n"))
(jupyter-org-file-link path)))
(defun jupyter-org-src-block (language parameters value &optional switches)
"Return a src-block `org-element'.
LANGUAGE, PARAMETERS, VALUE, and SWITCHES all have the same
meaning as a src-block `org-element'."
(declare (indent 2))
(org-element-create 'src-block
(list :language language
:parameters parameters
:switches switches
:value value)))
(defun jupyter-org-example-block (value)
"Return an example-block `org-element' with VALUE."
(org-element-create 'example-block
(list :value (org-element-normalize-string value))))
;; From `org-babel-insert-result'
(defun jupyter-org-tabulablep (r)
"Return non-nil when R can be turned into an `org-mode' table."
(and (listp r)
(null (cdr (last r)))
(cl-every
(lambda (e) (or (atom e) (null (cdr (last e)))))
r)))
;; From `org-babel-insert-result'
(defun jupyter-org-table-to-orgtbl (table)
"Return TABLE formatted as an `org-mode' table string."
(with-temp-buffer
(insert (concat (orgtbl-to-orgtbl
(if (cl-every
(lambda (e)
(or (eq e 'hline) (listp e)))
table)
table
(list table))
nil)
"\n"))
(goto-char (point-min))
(when (org-at-table-p) (org-table-align))
(buffer-string)))
(defun jupyter-org-scalar (value)
"Return a scalar VALUE.
If VALUE is a string, return either a fixed-width `org-element'
or example-block depending on
`org-babel-min-lines-for-block-output'.
If VALUE is another `org-element' return it unchanged.
If VALUE is a list and can be represented as a table, return an
`org-mode' table as a string. To distinguish the table from a
regular string, it has a non-nil org-table text property on its
first character.
Otherwise, return VALUE formated as a fixed-width `org-element'."
(cond
((stringp value)
(if (cl-loop with i = 0 for c across value if (eq c ?\n) do (cl-incf i)
thereis (>= i org-babel-min-lines-for-block-output))
(jupyter-org-example-block value)
(org-element-create 'fixed-width (list :value value))))
((and (listp value)
(or (memq (car value) org-element-all-objects)
(memq (car value) org-element-all-elements)))
value)
((and (listp value)
(jupyter-org-tabulablep value))
(jupyter-org-table-string (jupyter-org-table-to-orgtbl value)))
(t
(org-element-create 'fixed-width (list :value (format "%S" value))))))
(defun jupyter-org-results-drawer (&rest results)
"Return a drawer `org-element' containing RESULTS.
RESULTS can be either strings or other `org-element's. Newlines
are added after every `org-element' object in RESULTS, such as
file links, so that each result appears on a single line in the
string representation of the drawer. The returned drawer has a
name of \"RESULTS\"."
(apply #'org-element-set-contents
(list 'drawer (list :drawer-name "RESULTS"))
(cl-loop
for res in results
if (jupyter-org-object-p res)
collect res into ret and collect "\n" into ret