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draft.tex
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draft.tex
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\documentclass[12pt]{article}
\input{knitr.tex}
\usepackage{graphicx}
\usepackage{placeins}
\usepackage{float}
\usepackage{grffile}
\usepackage{color}
\usepackage{soul}
\usepackage{tabularx}
\usepackage{multirow}
% use \xspace to allow for space after a macro as necessary
\usepackage{xspace}
\usepackage{pdfpages}
\usepackage[top=1in, bottom=1in, left=1.25in, right=1.25in]{geometry}
\definecolor{commentcol}{rgb}{0.345, 0.345, 0.945}
\newcommand{\comment}[1]{\textcolor{commentcol}{[[#1]]}}%
\newcommand{\code}[1]{\texttt{#1}}
% general-purpose mathrm macros
\newcommand{\symsub}[2]{\ensuremath{#1_{\tiny \mathrm{#2}}}\xspace}
\newcommand{\mrm}[1]{\ensuremath{\mathrm{#1}}
\xspace}
\usepackage{framed}
\definecolor{randomcolor}{rgb}{.97, .27, .67}
\definecolor{shadecolor}{rgb}{.97, .97, .97}
\definecolor{messagecolor}{rgb}{0, 0, 0}
\definecolor{warningcolor}{rgb}{1, 0, 1}
\definecolor{errorcolor}{rgb}{1, 0, 0}
\usepackage{alltt}
\usepackage[]{natbib}
\usepackage{blkarray}
\usepackage{amsmath}
\usepackage{alltt}
\usepackage{hyperref}
\usepackage[utf8]{inputenc} % for accented characters
%% \pagenumbering{gobble}
%% stuff for editing
%\usepackage[markup=nocolor,addedmarkup=bf,deletedmarkup=sout]{changes}
%% to suppress notes & comments: \usepackage[final]{changes}
\usepackage{setspace}
%% \usepackage{changes} %%% Not playing well with others!
%% \usepackage[backgroundcolor=lightgray,textsize=tiny]{todonotes}
\usepackage[]{todonotes}
\bibliographystyle{chicago}
\title{Reassessing global historical \rzero estimates of canine rabies}
\author{Michael Li, Michael Roswell, Katie Hampson, Ben Bolker and Jonathan Dushoff}
\providecommand{\keywords}[1]{\textbf{\textit{Keywords:}} #1}
\IfFileExists{upquote.sty}{\usepackage{upquote}}{}
\begin{document}
%% \SweaveOpts{concordance=TRUE}
\newcommand{\dbic}{\ensuremath \Delta \texttt{BIC}}
\newcommand{\bmb}[1]{\comment{BB: #1}}
\newcommand{\jd}[1]{\comment{JD: #1}}
\newcommand{\kh}[1]{\comment{KH: #1}}
\newcommand{\mli}[1]{{\color{red} ML: #1}}
\newcommand{\mr}[1]{{\color{blue} MR: #1}}
\newcommand{\eqnref}[1]{Eq~\eqref{eq:#1}}
\newcommand{\eqnlabel}[1]{\label{eq:#1}}
\newcommand{\fref}[1]{Figure~\ref{fig:#1}}
\newcommand{\Fref}[1]{Figure~\ref{fig:#1}}
\newcommand{\flabel}[1]{\label{fig:#1}}
\newcommand{\add}[1]{{\color{blue} ADD: #1}}
\newcommand{\rzero}{\ensuremath{{\mathcal R}_0}\xspace}
\newcommand{\re}{\ensuremath{{\mathcal R}_{e}}\xspace}
\newcommand{\littler}{\ensuremath{r_0}\xspace}
\newcommand{\Gx}{\textsl{G}}
\newcommand{\G}{\Gx\xspace}
\newcommand{\Gs}{\Gx \xspace}
\newcommand{\SIx}{\textsl{SI}}
\newcommand{\SI}{\SIx\xspace}
\newcommand{\SIs}{\SIx s\xspace}
%% END MACROS SECTION
%\SweaveOpts{concordance=TRUE}
%\SweaveOpts{concordance=TRUE}
% \maketitle
{\Large
\textbf\newline{Reassessing global historical \rzero estimates of canine rabies} % Please use "sentence case" for title and headings (capitalize only the first word in a title (or heading), the first word in a subtitle (or subheading), and any proper nouns).
}
\newline
% Insert author names, affiliations and corresponding author email (do not include titles, positions, or degrees).
\\
Michael Li\textsuperscript{1,2*},
Michael Roswell \textsuperscript{1,3},
Katie Hampson\textsuperscript{4},
Benjamin M. Bolker\textsuperscript{1,2,5},
Jonathan Dushoff\textsuperscript{1,2,5}
\\
\\
\\
* Corresponding author: lim88@mcmaster.ca \\
\textbf{1} Department of Biology, McMaster University, Hamilton, Ontario, Canada
\\
\textbf{2} Department of Mathematics and Statistics, McMaster University, Hamilton, Ontario, Canada
\\
\textbf{3} Department of Biology, University of Maryland, College Park, Maryland, USA
\\
\textbf{4} Institute of BAH\&CM, University of Glasgow, Glasgow, UK
\\
\textbf{5} Institute for Infectious Diseases Research, McMaster University, Hamilton, Ontario, Canada
\\
\bigskip
% Insert additional author notes using the symbols described below. Insert symbol callouts after author names as necessary.
%
% Remove or comment out the author notes below if they aren't used.
\doublespacing
\keywords{incubation period, infectious period, generation interval}
\input{texknit/doc.tex}
\singlespacing
\bibliography{rabies}
\end{document}