Error using MMseqs2

[veronicamb]

Hello Edgardo,

I'm trying to run MMseqs2 on some of my data and I keep getting this error message:

Traceback (most recent call last):
File "/home/FCAM/vbueno/miniconda3/envs/captus/bin/captus_assembly", line 10, in
sys.exit(main())
^^^^^^
File "/home/FCAM/vbueno/miniconda3/envs/captus/lib/python3.11/site-packages/captus/captus_assembly.py", line 1403, in main
CaptusAssembly()
File "/home/FCAM/vbueno/miniconda3/envs/captus/lib/python3.11/site-packages/captus/captus_assembly.py", line 90, in init
getattr(self, args.command)()
File "/home/FCAM/vbueno/miniconda3/envs/captus/lib/python3.11/site-packages/captus/captus_assembly.py", line 1061, in extract
extract(full_command, args)
File "/home/FCAM/vbueno/miniconda3/envs/captus/lib/python3.11/site-packages/captus/extract.py", line 574, in extract
log.log(f'{"sensitivity":>{mar}}: {bold(args.sensitivity)}')
^^^^^^^^^^^^^^^^
AttributeError: 'Namespace' object has no attribute 'sensitivity'. Did you mean: 'cl_sensitivity'?

Any idea how to fix this?

thank you!

Veronica

[edgardomortiz]

Hi Veronica,

I fixed that issue before, be sure to use version 1.0.0 (installed from bioconda). Or re-clone and refresh the repository if you have more copies cloned elsewhere (if you clone the version there should be 1.0.1).

Edgardo

[veronicamb]

Fantastic!! Thanks Edgardo!