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check_model error suggestions are not complete #713

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CorneeldH opened this issue Apr 18, 2024 · 4 comments · Fixed by easystats/see#342
Closed

check_model error suggestions are not complete #713

CorneeldH opened this issue Apr 18, 2024 · 4 comments · Fixed by easystats/see#342
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3 investigators ❔❓ Need to look further into this issue docs 📚 Something to be adressed in docs and/or vignettes

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@CorneeldH
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I get the following error when running check_model, even mtcars etc.


Error: The RStudio 'Plots' window is too small to show this set of plots. You may try one of the
  following steps to resolve this problem.
  
- To fix this issue, please make the window larger.
  
- If this doesn't help, try to reset your zoom settings. In RStudio, go to Menu "View >
  Actual Size" and then retry.
  
- If this still doesn't resolve your problems, you may check whether your apps are rescaled.
  On Windows, this can be done in the display settings (Start > Settings > System > Display,
  "Scale and layout"). Reduce the scaling and try again.
  
- Finally, you can try to decrease the base font-size of your theme before plotting. Load
  `library(ggplot2)` and run: `theme_set(theme_classic(base_size = 6))`

Also via model_dasbhoard function I get the same error. I tried external plot windows etc, but none of it works.
I tried the four suggestions, but that didn't solve it. I tried searching the error, but couldn't find the code that originates it or solutions

I did saw:

Are there any pointers where to look for the origin of this very strange error, since I'm clearly one of the few people having it it must be something local, but I'm a bit at loss..
@strengejacke strengejacke added 3 investigators ❔❓ Need to look further into this issue docs 📚 Something to be adressed in docs and/or vignettes labels Apr 19, 2024
@strengejacke
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Can you try options(easystats_erros = TRUE), then re-run your code and post the exact error message?

@CorneeldH
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Thanks for the quick response.

(BTW, I tested it on second machine, with same issue)

With your setting I get the error: "Error: ‘==’ only defined for equally-sized data frames"

When I search this repo on this error I see: #691 and I move back to performance@0.10.8 and ggplot2@3.4.4 I get a blank plot and:
Error: Problem while converting geom to grob.

When I also move see back tot 0.8.0 I get only a blank plot (no more error message).

It seems that I have to upgrade / downgrade somewhere in the whole dependency stream

Windows 11, R Studio 2023.12.1 Build 402

session_info()

─ Session info ─────────────────────────────────────────────────────────────
 setting  value
 version  R version 4.3.1 (2023-06-16 ucrt)
 os       Windows 11 x64 (build 22631)
 system   x86_64, mingw32
 ui       RStudio
 language (EN)
 collate  English_Netherlands.utf8
 ctype    English_Netherlands.utf8
 tz       Europe/Amsterdam
 date     2024-04-19
 rstudio  2023.12.1+402 Ocean Storm (desktop)
 pandoc   3.1.1 @ C:/Program Files/RStudio/resources/app/bin/quarto/bin/tools/ (via rmarkdown)

─ Packages ─────────────────────────────────────────────────────────────────
 ! package           * version    date (UTC) lib source
 P askpass             1.1        2019-01-13 [?] CRAN (R 4.3.1)
 P backports           1.4.1      2021-12-13 [?] CRAN (R 4.3.1)
   bayestestR        * 0.13.2     2024-04-01 [1] https://easystats.r-universe.dev (R 4.3.3)
 P bit                 4.0.5      2022-11-15 [?] CRAN (R 4.3.2)
 P bit64               4.0.5      2020-08-30 [?] CRAN (R 4.3.2)
 P bitops              1.0-7      2021-04-24 [?] CRAN (R 4.3.1)
 P brio                1.1.3      2021-11-30 [?] CRAN (R 4.3.2)
 P broom             * 1.0.5      2023-06-09 [?] CRAN (R 4.3.2)
 P bslib               0.5.0      2023-06-09 [?] CRAN (R 4.3.1)
 P BurStMisc         * 1.1        2016-08-13 [?] CRAN (R 4.3.2)
 P cachem              1.0.8      2023-05-01 [?] CRAN (R 4.3.2)
 P caret             * 6.0-94     2023-03-21 [?] CRAN (R 4.3.2)
 P caTools             1.18.2     2021-03-28 [?] CRAN (R 4.3.2)
 P cellranger          1.1.0      2016-07-27 [?] CRAN (R 4.3.2)
 P checkmate         * 2.3.1      2023-12-04 [?] RSPM (R 4.3.0)
 P class               7.3-22     2023-05-03 [?] CRAN (R 4.3.1)
 P cli               * 3.6.2      2023-12-11 [?] RSPM (R 4.3.0)
 P codetools           0.2-19     2023-02-01 [?] CRAN (R 4.3.1)
 P colorspace          2.1-0      2023-01-23 [?] CRAN (R 4.3.2)
   correlation       * 0.8.4.2    2024-04-01 [1] https://easystats.r-universe.dev (R 4.3.3)
 P corrr             * 0.4.4      2022-08-16 [?] CRAN (R 4.3.3)
 P crayon              1.5.2      2022-09-29 [?] CRAN (R 4.3.2)
 P crosstalk           1.2.0      2021-11-04 [?] CRAN (R 4.3.2)
 P crul                1.4.0      2023-05-17 [?] CRAN (R 4.3.2)
 P curl                5.2.0      2023-12-08 [?] RSPM (R 4.3.0)
 P data.table          1.15.4     2024-03-30 [?] CRAN (R 4.3.3)
 P dataMaid          * 1.4.1      2021-10-08 [?] CRAN (R 4.3.2)
   datawizard        * 0.10.0     2024-04-12 [1] https://easystats.r-universe.dev (R 4.3.3)
 P DEoptimR            1.1-2      2023-08-28 [?] CRAN (R 4.3.1)
 P devtools          * 2.4.5      2022-10-11 [?] CRAN (R 4.3.2)
 P dials               1.2.0      2023-04-03 [?] CRAN (R 4.3.2)
 P DiceDesign          1.9        2021-02-13 [?] CRAN (R 4.3.2)
 P digest            * 0.6.33     2023-07-07 [?] CRAN (R 4.3.2)
   doParallel          1.0.17     2022-02-07 [1] CRAN (R 4.3.3)
 P dplyr             * 1.1.2      2023-04-20 [?] CRAN (R 4.3.1)
 P DT                  0.28       2023-05-18 [?] CRAN (R 4.3.1)
   easystats         * 0.7.1.1    2024-04-01 [1] https://easystats.r-universe.dev (R 4.3.3)
   effectsize        * 0.8.7.1    2024-04-03 [1] https://easystats.r-universe.dev (R 4.3.3)
 P ellipsis            0.3.2      2021-04-29 [?] CRAN (R 4.3.2)
 P emmeans             1.8.7      2023-06-23 [?] CRAN (R 4.3.1)
 P estimability        1.4.1      2022-08-05 [?] CRAN (R 4.3.1)
 P evaluate            0.21       2023-05-05 [?] CRAN (R 4.3.1)
 P fansi               1.0.4      2023-01-22 [?] CRAN (R 4.3.1)
 P farver              2.1.1      2022-07-06 [?] CRAN (R 4.3.2)
 P fastmap             1.1.1      2023-02-24 [?] CRAN (R 4.3.2)
   flexdashboard     * 0.6.2      2023-08-11 [1] CRAN (R 4.3.3)
 P flextable         * 0.9.2      2023-06-18 [?] CRAN (R 4.3.1)
 P fontawesome         0.5.1      2023-04-18 [?] CRAN (R 4.3.1)
 P fontBitstreamVera   0.1.1      2017-02-01 [?] CRAN (R 4.3.1)
 P fontLiberation      0.1.0      2016-10-15 [?] CRAN (R 4.3.1)
 P fontquiver          0.2.1      2017-02-01 [?] CRAN (R 4.3.2)
 P forcats           * 1.0.0      2023-01-29 [?] CRAN (R 4.3.2)
 P foreach             1.5.2      2022-02-02 [?] CRAN (R 4.3.2)
 P fs                  1.6.3      2023-07-20 [?] CRAN (R 4.3.2)
 P fst               * 0.9.8      2022-02-08 [?] CRAN (R 4.3.2)
 P fstcore             0.9.14     2023-01-12 [?] CRAN (R 4.3.2)
 P furrr             * 0.3.1      2022-08-15 [?] CRAN (R 4.3.2)
 P future            * 1.33.0     2023-07-01 [?] CRAN (R 4.3.2)
 P future.apply        1.11.0     2023-05-21 [?] CRAN (R 4.3.2)
 P gdtools             0.3.3      2023-03-27 [?] CRAN (R 4.3.1)
 P generics            0.1.3      2022-07-05 [?] CRAN (R 4.3.2)
 P gfonts              0.2.0      2023-01-08 [?] CRAN (R 4.3.2)
 P ggfortify         * 0.4.16     2023-03-20 [?] CRAN (R 4.3.2)
 P ggplot2           * 3.4.4      2023-10-12 [?] CRAN (R 4.3.2)
 P ggrepel           * 0.9.3      2023-02-03 [?] CRAN (R 4.3.1)
 P globals             0.16.2     2022-11-21 [?] CRAN (R 4.3.1)
 P glue                1.6.2      2022-02-24 [?] CRAN (R 4.3.2)
 P gower               1.0.1      2022-12-22 [?] CRAN (R 4.3.1)
 P GPfit               1.0-8      2019-02-08 [?] CRAN (R 4.3.2)
 P gridExtra         * 2.3        2017-09-09 [?] CRAN (R 4.3.2)
 P gtable              0.3.3      2023-03-21 [?] CRAN (R 4.3.1)
 P hardhat             1.3.0      2023-03-30 [?] CRAN (R 4.3.2)
 P haven             * 2.5.3      2023-06-30 [?] CRAN (R 4.3.2)
 P highr               0.10       2022-12-22 [?] CRAN (R 4.3.2)
 P hms                 1.1.3      2023-03-21 [?] CRAN (R 4.3.2)
 P htmltools           0.5.5      2023-03-23 [?] CRAN (R 4.3.1)
 P htmlwidgets         1.6.2      2023-03-17 [?] CRAN (R 4.3.1)
 P httpcode            0.3.0      2020-04-10 [?] CRAN (R 4.3.2)
 P httpuv              1.6.14     2024-01-26 [?] CRAN (R 4.3.2)
 P httr              * 1.4.6      2023-05-08 [?] CRAN (R 4.3.1)
   insight           * 0.19.10    2024-04-15 [1] https://easystats.r-universe.dev (R 4.3.3)
 P ipred               0.9-14     2023-03-09 [?] CRAN (R 4.3.2)
 P iterators           1.0.14     2022-02-05 [?] CRAN (R 4.3.2)
 P janitor           * 2.2.0      2023-02-02 [?] CRAN (R 4.3.2)
 P jquerylib           0.1.4      2021-04-26 [?] CRAN (R 4.3.2)
 P jsonlite            1.8.8      2023-12-04 [?] RSPM (R 4.3.0)
 P knitr               1.43       2023-05-25 [?] CRAN (R 4.3.1)
 P labeling            0.4.2      2020-10-20 [?] CRAN (R 4.3.1)
 P later               1.3.1      2023-05-02 [?] CRAN (R 4.3.2)
 P lattice           * 0.21-8     2023-04-05 [?] CRAN (R 4.3.1)
 P lava                1.7.2.1    2023-02-27 [?] CRAN (R 4.3.1)
 P lhs                 1.1.6      2022-12-17 [?] CRAN (R 4.3.2)
 P lifecycle           1.0.3      2022-10-07 [?] CRAN (R 4.3.1)
 P listenv             0.9.0      2022-12-16 [?] CRAN (R 4.3.2)
 P lubridate         * 1.9.2      2023-02-10 [?] CRAN (R 4.3.1)
 P magrittr            2.0.3      2022-03-30 [?] CRAN (R 4.3.2)
 P MASS              * 7.3-60     2023-05-04 [?] CRAN (R 4.3.1)
 P Matrix              1.6-0      2023-07-08 [?] CRAN (R 4.3.1)
 P memoise             2.0.1      2021-11-26 [?] CRAN (R 4.3.2)
 P mgcv                1.9-0      2023-07-11 [?] CRAN (R 4.3.2)
 P mime                0.12       2021-09-28 [?] CRAN (R 4.3.1)
 P miniUI              0.1.1.1    2018-05-18 [?] CRAN (R 4.3.2)
   modelbased        * 0.8.7      2024-04-03 [1] https://easystats.r-universe.dev (R 4.3.3)
 P ModelMetrics        1.2.2.2    2020-03-17 [?] CRAN (R 4.3.2)
 P modelsummary      * 2.0.0      2024-03-31 [?] CRAN (R 4.3.3)
 P multcomp            1.4-25     2023-06-20 [?] CRAN (R 4.3.2)
 P munsell             0.5.0      2018-06-12 [?] CRAN (R 4.3.2)
 P mvtnorm             1.2-2      2023-06-08 [?] CRAN (R 4.3.1)
 P nlme                3.1-162    2023-01-31 [?] CRAN (R 4.3.1)
 P nnet                7.3-19     2023-05-03 [?] CRAN (R 4.3.1)
 P officer           * 0.6.2      2023-03-28 [?] CRAN (R 4.3.1)
 P opdisDownsampling   1.0.1      2024-04-15 [?] CRAN (R 4.3.3)
 P openssl             2.1.0      2023-07-15 [?] CRAN (R 4.3.1)
 P openxlsx          * 4.2.5.2    2023-02-06 [?] CRAN (R 4.3.2)
 P pander              0.6.5      2022-03-18 [?] CRAN (R 4.3.2)
 P parallelly          1.36.0     2023-05-26 [?] CRAN (R 4.3.1)
   parameters        * 0.21.6.3   2024-04-10 [1] https://easystats.r-universe.dev (R 4.3.3)
 P parsnip           * 1.2.0      2024-02-16 [?] CRAN (R 4.3.2)
 P patchwork           1.1.3      2023-08-14 [?] CRAN (R 4.3.1)
 P pbmcapply           1.5.1      2022-04-28 [?] CRAN (R 4.3.1)
 P performance       * 0.10.8     2023-10-30 [?] CRAN (R 4.3.1)
 P pillar              1.9.0      2023-03-22 [?] CRAN (R 4.3.2)
 P pkgbuild            1.4.3      2023-12-10 [?] CRAN (R 4.3.2)
 P pkgconfig           2.0.3      2019-09-22 [?] CRAN (R 4.3.2)
 P pkgload             1.3.2.1    2023-07-08 [?] CRAN (R 4.3.1)
 P plyr                1.8.8      2022-11-11 [?] CRAN (R 4.3.1)
 P pracma              2.4.4      2023-11-10 [?] CRAN (R 4.3.3)
 P pROC                1.18.4     2023-07-06 [?] CRAN (R 4.3.1)
 P prodlim             2023.03.31 2023-04-02 [?] CRAN (R 4.3.1)
 P profvis             0.3.8      2023-05-02 [?] CRAN (R 4.3.2)
 P promises            1.2.0.1    2021-02-11 [?] CRAN (R 4.3.1)
 P purrr             * 1.0.1      2023-01-10 [?] CRAN (R 4.3.1)
 P qqconf              1.3.2      2023-04-14 [?] CRAN (R 4.3.3)
 P qqplotr             0.0.6      2023-01-25 [?] CRAN (R 4.3.3)
 P R6                  2.5.1      2021-08-19 [?] CRAN (R 4.3.2)
 P ragg                1.2.5      2023-01-12 [?] CRAN (R 4.3.1)
 P rappdirs            0.3.3      2021-01-31 [?] CRAN (R 4.3.2)
 P Rcpp                1.0.11     2023-07-06 [?] CRAN (R 4.3.2)
 P readr             * 2.1.4      2023-02-10 [?] CRAN (R 4.3.2)
 P readxl            * 1.4.3      2023-07-06 [?] CRAN (R 4.3.2)
 P recipes           * 1.0.10     2024-02-18 [?] CRAN (R 4.3.2)
 P remotes             2.4.2.1    2023-07-18 [?] CRAN (R 4.3.2)
   renv                1.0.0      2023-07-07 [1] CRAN (R 4.3.1)
   report            * 0.5.8.2    2024-04-01 [1] https://easystats.r-universe.dev (R 4.3.3)
 P reshape2            1.4.4      2020-04-09 [?] CRAN (R 4.3.2)
 P rlang               1.1.1      2023-04-28 [?] CRAN (R 4.3.1)
 P rmarkdown           2.23       2023-07-01 [?] CRAN (R 4.3.1)
 P robustbase          0.99-0     2023-06-16 [?] CRAN (R 4.3.2)
 P rpart               4.1.19     2022-10-21 [?] CRAN (R 4.3.1)
 P rsample           * 1.2.0      2023-08-23 [?] CRAN (R 4.3.2)
 P rstudio.prefs       0.1.9      2022-07-16 [?] CRAN (R 4.3.2)
 P rstudioapi          0.13       2020-11-12 [?] CRAN (R 4.3.1)
 P rvest             * 1.0.3      2022-08-19 [?] CRAN (R 4.3.2)
 P sandwich            3.0-2      2022-06-15 [?] CRAN (R 4.3.2)
 P sass                0.4.7      2023-07-15 [?] CRAN (R 4.3.2)
 P scales              1.3.0      2023-11-28 [?] CRAN (R 4.3.2)
 P see               * 0.8.0      2023-06-05 [?] CRAN (R 4.3.1)
 P sessioninfo         1.2.2      2021-12-06 [?] CRAN (R 4.3.2)
 P shiny               1.7.4.1    2023-07-06 [?] CRAN (R 4.3.1)
 P slackr            * 3.3.1      2023-02-26 [?] CRAN (R 4.3.2)
 P snakecase           0.11.0     2019-05-25 [?] CRAN (R 4.3.1)
 P sp                * 2.0-0      2023-06-22 [?] CRAN (R 4.3.1)
 P stargazer         * 5.2.3      2022-03-04 [?] CRAN (R 4.3.1)
 P stringi             1.7.12     2023-01-11 [?] CRAN (R 4.3.1)
 P stringr           * 1.5.0      2022-12-02 [?] CRAN (R 4.3.1)
 P survival            3.5-5      2023-03-12 [?] CRAN (R 4.3.1)
 P systemfonts         1.0.4      2022-02-11 [?] CRAN (R 4.3.1)
 P tables              0.9.25     2024-04-13 [?] CRAN (R 4.3.3)
 P testthat          * 3.1.10     2023-07-06 [?] CRAN (R 4.3.1)
 P textshaping         0.3.6      2021-10-13 [?] CRAN (R 4.3.1)
 P TH.data             1.1-2      2023-04-17 [?] CRAN (R 4.3.2)
 P this.path           2.4.0      2024-02-16 [?] CRAN (R 4.3.2)
 P tibble            * 3.2.1      2023-03-20 [?] CRAN (R 4.3.2)
 P tidyr             * 1.3.0      2023-01-24 [?] CRAN (R 4.3.2)
 P tidyselect          1.2.0      2022-10-10 [?] CRAN (R 4.3.2)
 P timechange          0.2.0      2023-01-11 [?] CRAN (R 4.3.2)
 P timeDate            4022.108   2023-01-07 [?] CRAN (R 4.3.2)
 P tinytable           0.2.1      2024-03-28 [?] CRAN (R 4.3.3)
 P tune              * 1.1.2      2023-08-23 [?] CRAN (R 4.3.2)
 P twosamples          2.0.1      2023-06-23 [?] CRAN (R 4.3.3)
 P tzdb                0.4.0      2023-05-12 [?] CRAN (R 4.3.2)
 P urlchecker          1.0.1      2021-11-30 [?] CRAN (R 4.3.2)
 P usethis           * 2.2.2      2023-07-06 [?] CRAN (R 4.3.2)
 P utf8                1.2.3      2023-01-31 [?] CRAN (R 4.3.1)
 P uuid                1.1-0      2022-04-19 [?] CRAN (R 4.3.1)
 P vctrs               0.6.3      2023-06-14 [?] CRAN (R 4.3.1)
 P vroom             * 1.6.3      2023-04-28 [?] CRAN (R 4.3.1)
 P vusa              * 0.0.0.9000 2024-04-15 [?] Github (vusaverse/vusa@fca6198)
 P vvauditor         * 0.6.0      2024-02-26 [?] CRAN (R 4.3.2)
 P vvconverter       * 0.5.9      2024-02-13 [?] CRAN (R 4.3.2)
 P vvfiller          * 0.6.7      2023-01-26 [?] CRAN (R 4.3.2)
 P vvmover           * 1.6.0      2024-02-26 [?] CRAN (R 4.3.2)
 P vvsculptor        * 0.4.10     2023-01-30 [?] RSPM (R 4.3.0)
 P withr               2.5.0      2022-03-03 [?] CRAN (R 4.3.1)
 P workflows         * 1.1.3      2023-02-22 [?] CRAN (R 4.3.2)
 P workflowsets      * 1.0.1      2023-04-06 [?] CRAN (R 4.3.2)
 P xfun                0.39       2023-04-20 [?] CRAN (R 4.3.1)
 P xml2                1.3.5      2023-07-06 [?] CRAN (R 4.3.2)
 P xtable              1.8-4      2019-04-21 [?] CRAN (R 4.3.2)
 P yaml                2.3.7      2023-01-23 [?] CRAN (R 4.3.2)
 P yardstick           1.2.0      2023-04-21 [?] CRAN (R 4.3.2)
 P zip                 2.3.0      2023-04-17 [?] CRAN (R 4.3.2)
 P zoo                 1.8-12     2023-04-13 [?] CRAN (R 4.3.2)

 [1] C:/Users/chh230/repositories/sa-scripts/renv/library/R-4.3/x86_64-w64-mingw32
 [2] C:/Users/chh230/AppData/Local/R/cache/R/renv/sandbox/R-4.3/x86_64-w64-mingw32/e9e85620

 P ── Loaded and on-disk path mismatch.

@CorneeldH
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Yes! After writing the above I check the dependency stream myself and found patchwork.

After updating everything to the latest version it worked. The dependency on patchwork is given at 'suggested' in see, but it doesn't suggest upgrading to the given version when installing via renv or when stuff doesn't work.

Thanks for the debugging tip! And of course for all the open source work. Checking versions etc made me read the changelog so I saw all the continuous improvements you guys are making. Great stuff, thanks!

@strengejacke
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So updating patchwork helped?

strengejacke added a commit to easystats/see that referenced this issue Apr 29, 2024
@strengejacke
check_model error suggestions are not complete
2a7141d 
Fixes easystats/performance#713
@strengejacke strengejacke mentioned this issue Apr 29, 2024
Merged
strengejacke added a commit to easystats/see that referenced this issue Apr 29, 2024
@strengejacke
check_model error suggestions are not complete (#342)
7dc72a6 
Fixes easystats/performance#713
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check_model error suggestions are not complete easystats/see
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@CorneeldH @strengejacke