/
DESCRIPTION
85 lines (85 loc) 路 1.97 KB
/
DESCRIPTION
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
Package: dynplot
Type: Package
Title: Visualising Single-Cell Trajectories
Version: 1.1.2
Authors@R:
c(person(given = "Robrecht",
family = "Cannoodt",
role = c("aut", "cre", "cph"),
email = "rcannood@gmail.com",
comment = c(ORCID = "0000-0003-3641-729X")),
person(given = "Wouter",
family = "Saelens",
role = "aut",
email = "wouter.saelens@ugent.be",
comment = c(ORCID = "0000-0002-7114-6248")))
Description: Visualise a single-cell trajectory as a graph or dendrogram,
as a dimensionality reduction or heatmap of the expression data,
or a comparison between two trajectories as a pairwise scatterplot
or dimensionality reduction projection. Saelens and Cannoodt et
al. (2019) <doi:10.1038/s41587-019-0071-9>.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
URL: https://github.com/dynverse/dynplot
BugReports: https://github.com/dynverse/dynplot/issues
Depends:
R (>= 3.0.0)
Imports:
assertthat,
dplyr,
dynutils (>= 1.0.2),
dynfeature (>= 1.0.0),
dyndimred (>= 1.0.0),
dynwrap (>= 1.0.0),
GA,
ggforce,
ggplot2 (>= 3.0),
ggraph (>= 2.0),
ggrepel,
igraph,
MASS,
methods,
patchwork,
purrr,
reshape2,
tibble,
tidyr,
tidygraph,
vipor
Suggests:
covr,
hexbin,
knitr,
RColorBrewer,
rje,
rmarkdown,
testthat (>= 3.0.0),
uwot
VignetteBuilder: knitr
Collate:
'milestone_palette.R'
'add_milestone_coloring.R'
'add_cell_coloring.R'
'add_density_coloring.R'
'data.R'
'dummy_proofing.R'
'expect_ggplot.R'
'is_colour_vector.R'
'linearise_cells.R'
'mix_colors.R'
'optimize_order.R'
'package.R'
'plot_dendro.R'
'project_waypoints.R'
'plot_dimred.R'
'plot_edge_flips.R'
'plot_graph.R'
'plot_heatmap.R'
'plot_linearised_comparison.R'
'plot_onedim.R'
'plot_strip.R'
'plot_topology.R'
'theme_clean.R'
Roxygen: list(markdown = TRUE)