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NEWS.md

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dynguidelines 1.0.1 (29-06-2020)

Fixes

  • Fix get_questions(): Remove accidental reliance on list name autocompletion, which has been removed from R.

Minor changes

  • Migrate from Travis CI to Github Actions for CMD check and codecov, not yet for automated deployment.

dynguidelines 1.0 (29-03-2019)

Minor changes

  • Remove dyneval dependency
  • Minor changes due to changes in dynwrap v1.0

dynguidelines 0.3.2 (17-12-2018)

New features

  • Enable automatic deployment via travis-ci

Fixes

  • Justify lens buttons
  • Use master branch of dynwrap instead of devel

dynguidelines 0.3.1 (16-11-2018)

New features

  • Time and memory are now formatted relative to the limits in the questions (fixes #46)
  • If time and memory exceed the limit, they are clipped

Fixes

  • Remove debug javascript messages
  • Fix javascript error for lenses which activated wrong columns
  • Fix bug when no n_cells or n_features is entered
  • Clean stability column names
  • Clean scalability column names
  • Add tooltips to priors
  • Small fixes for default columns
  • Cleanup of exported function and documentation

dynguidelines 0.3.0 (15-11-2018)

New features

  • Add category headers, just like figure 2/3
  • Columns are now sorted within each category, categories are sorted according to figure 2/3
  • New columns: overall scores within each category, wrapper type, prior information
  • New lens: Summary (Fig. 2)
  • Show lenses by default

Fixes

  • Several small cosmetic changes
  • Code and doi links are opened in a new tab
  • Not knowing the explicit topology will now filter on multifurcations as well

dynguidelines 0.2.1 (14-11-2018)

  • Add warning column for when a method errors too often
  • Several fixes for more readable columns (such as usability)
  • Update deployment instructions
  • Rename scaling to scalability

dynguidelines 0.2.0 (14-11-2018)

  • Update for new dynbenchmark results
  • Add new coloring scheme
  • Add stability, shown by default as a warning that a method produces an unstable result

dynguidelines 0.1.0 (16-04-2018)

  • INITIAL RELEASE: dynguidelines, user guidelines for trajectory inference
  • A shiny app which lets you select the most optimal trajectory inference method based on a number of user-dependent and dataset-dependent parameters