Collection of Jupyter notebooks that were used for LAMPA paper.
Run the main notebook, test_score.ipynb, that simulates HHsearch estimation of P-, E-value
and Probability from the hit Viterbi score and secondary score (i.e. Figures 7 ans S3):
Run probability_gain.ipynb notebook that shows the interactive version of Figure 6:
Note: Notebook's start can take few minutes. When it's finally ready, press ">>" button or use "Kernel/Restart and Run All" menu command.