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Enhance implementation of EGC algorithm #114

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cb-Hades opened this issue Feb 23, 2024 Discussed in #113 · 0 comments

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enhancement refactoring

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cb-Hades commented Feb 23, 2024 •

edited

Solve energy generating cycles in a model automatically.

Currently implemented solver:

GreedyEGCsolver: greedy algorithm, that is based on solving EGCs by using a modifications on ONE reaction to solve (at least) one of the existing cycle

Further ideas:

LP or DP programming to find all/more complex solutions
ask group of Müller-Hannemann
while less important, maybe implement a check to check for futile cycles as well

Discussed in #113

^{Originally posted by GwennyGit February 22, 2024}
Possible ideas can be found in the following Wikipedia definitions:

cb-Hades added enhancement refactoring labels

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          Added GreedyEGCSolver #114

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          Adjusted limiter #114

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Integration of utility from SPECIMEN into refinegems #99

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