appimage-builder.yml

#AppImage script
#https://appimage-builder.readthedocs.io/en/latest/examples/pyqt.html
version: 1
script:
  # Remove any previous build
  - rm -rf AppDir  | true
  # Make usr and icons dirs
  - mkdir -p AppDir/usr/src
  - mkdir -p AppDir/usr/share/icons/hicolor/256x256/apps
  # Copy the python application code into the AppDir
  - cp main.py  AppDir/usr/src -r
  - cp -r snipgenie AppDir/usr/src -r
  - cp img/logo.svg AppDir/usr/share/icons/hicolor/256x256/apps/snipgenie.svg
  # Install application dependencies
  - pip3 install --system --ignore-installed --prefix=/usr --root=AppDir -r ./requirements.txt

AppDir:
  path: ./AppDir

  app_info:
    id: org.btbgenie.snipgenie
    name: snipgenie
    icon: snipgenie
    version: 0.2.0-28-g7b45938
    # Set the python executable as entry point
    exec: usr/bin/python3
    # Set the application main script path as argument. Use '$@' to forward CLI parameters
    exec_args: "$APPDIR/usr/src/main.py $@"

  apt:
    arch: amd64
    sources:
      - sourceline: 'deb [arch=amd64] http://archive.ubuntu.com/ubuntu/ focal main restricted universe multiverse'
        key_url: 'https://keyserver.ubuntu.com/pks/lookup?op=get&search=0x871920D1991BC93C'
    #  - sourceline: 'deb [arch=amd64] http://archive.ubuntu.com/ubuntu/ bionic main restricted universe multiverse'
    #    key_url: 'http://keyserver.ubuntu.com/pks/lookup?op=get&search=0x3b4fe6acc0b21f32'

    include:
      - python3
      - python3-pkg-resources
      - bcftools
      - samtools
      - bwa
      - fasttree

    exclude: []

  runtime:
    env:
      PATH: '${APPDIR}/usr/bin:${PATH}'
      # Set python home
      # See https://docs.python.org/3/using/cmdline.html#envvar-PYTHONHOME
      PYTHONHOME: '${APPDIR}/usr'
      # Path to the site-packages dir or other modules dirs
      # See https://docs.python.org/3/using/cmdline.html#envvar-PYTHONPATH
      PYTHONPATH: '${APPDIR}/usr/lib/python3.8/site-packages'

AppImage:
  update-information: 'gh-releases-zsync|AppImageCrafters|python-snipgenie|latest|snipgenie-*x86_64.AppImage.zsync'
  sign-key: None
  arch: x86_64