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work_log_run_alchemist_unfinished2
27 lines (13 loc) · 5.51 KB
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work_log_run_alchemist_unfinished2
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perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 1 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 2 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 3 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 4 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 5 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 6 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 7 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 8 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 9 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 10 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 11 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 12 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/unfinished2.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --step 13 --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv -users songcao --groupname SomaticWXS --sre 1