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work_log_run_alchemist_b9
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work_log_run_alchemist_b9
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#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 1
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/b9 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 2 --sre 1
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 3
perl somaticwrapper.pl --rdir /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/b9 --log /storage1/fs1/dinglab/Active/Projects/scao/alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 4 --sre 1
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 5
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 6
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 7
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 8
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 9
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 10
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 11
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 12
#perl somaticwrapper.pl --rdir /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9 --log /storage1/fs1/songcao/Active/Project/GDAN/Alchemist/somatic/b9.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q general --smg /storage1/fs1/songcao/Active/Database/smg_database/cancer_gene_list_cell_uniq.tsv --users songcao --groupname SomaticWXS --step 13