/
work_log_run_alchemist_b6
29 lines (15 loc) · 4.72 KB
/
work_log_run_alchemist_b6
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
## b1 batch ##
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 1
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 2
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 3
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 4
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 5
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --sre 1 --step 6
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 7
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 8
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 9
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 10
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 11
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 12
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 13
#perl somaticwrapper.pl --rdir /gscmnt/gc2541/scao/alchemist/somatic/b6 --log /gscmnt/gc2541/scao/alchemist/somatic/b6.log --ref /gscmnt/gc2521/dinglab/mwyczalk/somatic-wrapper-data/image.data/A_Reference/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --q research-hpc --smg /gscmnt/gc3027/dinglab/medseq/smg_database/cancer_gene_list_cell_uniq.tsv --step 14