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work_log_tertpanatac
24 lines (13 loc) · 3 KB
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work_log_tertpanatac
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### step 1 ###
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 1
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 2
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 3
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 4
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 5
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 6
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 7
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 8
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 9
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertpanatac --log /scratch1/fs1/dinglab/scao/gw/tertpanatac.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 10
## step 7
perl germlinewrapper.pl --rdir /scratch1/fs1/dinglab/scao/gw/tertvep102fail --log /scratch1/fs1/dinglab/scao/gw/tertvep102fail.log --ref /storage1/fs1/songcao/Active/Database/hg38_database/GRCh38.d1.vd1/GRCh38.d1.vd1.fa --users songcao --groupname GermlineWXS --q dinglab --step 7 --sre 1