{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":95711649,"defaultBranch":"master","name":"germlinewrapper","ownerLogin":"ding-lab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2017-06-28T21:05:57.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/3360897?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1707509597.0","currentOid":""},"activityList":{"items":[{"before":"5b125443b66dee1872421cfcb1d38a3597bfc64e","after":"9ef3c813ddbf31af418b7b08fc7a070369a72010","ref":"refs/heads/v2.4","pushedAt":"2024-02-12T18:56:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"add complete steps for vep2","shortMessageHtmlLink":"add complete steps for vep2"}},{"before":"bcb536d05bca37619aee1435090cd693b6935f7b","after":"5b125443b66dee1872421cfcb1d38a3597bfc64e","ref":"refs/heads/v2.4","pushedAt":"2024-02-12T16:23:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"update vep2","shortMessageHtmlLink":"update vep2"}},{"before":"16837499941c516017ff17da471e067f5e975e34","after":"bcb536d05bca37619aee1435090cd693b6935f7b","ref":"refs/heads/v2.4","pushedAt":"2024-02-09T20:16:35.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"udpdate vep","shortMessageHtmlLink":"udpdate vep"}},{"before":null,"after":"16837499941c516017ff17da471e067f5e975e34","ref":"refs/heads/v2.4","pushedAt":"2024-02-09T20:13:17.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"add Fernanda VEP","shortMessageHtmlLink":"add Fernanda VEP"}},{"before":"7f6e76504b6a2a4d5ef3c60894277906714df83b","after":"a9658a8f13854ea45e2b65898ac979866ab57e85","ref":"refs/heads/master","pushedAt":"2023-11-30T18:24:08.000Z","pushType":"force_push","commitsCount":0,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"update bcftools path","shortMessageHtmlLink":"update bcftools path"}},{"before":"23ab84df310f10e091e30c16aa69595597daa244","after":"7f6e76504b6a2a4d5ef3c60894277906714df83b","ref":"refs/heads/master","pushedAt":"2023-11-30T18:19:39.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"Merge branch 'master' of https://github.com/ding-lab/germlinewrapper","shortMessageHtmlLink":"Merge branch 'master' of https://github.com/ding-lab/germlinewrapper"}},{"before":"f294bb97ea4492de16673432fcfe2c49d8084b60","after":"a9658a8f13854ea45e2b65898ac979866ab57e85","ref":"refs/heads/cp1.v2.3","pushedAt":"2023-10-11T13:31:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"update bcftools path","shortMessageHtmlLink":"update bcftools path"}},{"before":"98aee83a0d7b0fdfbf01c82d8f15a13460bae365","after":"f294bb97ea4492de16673432fcfe2c49d8084b60","ref":"refs/heads/cp1.v2.3","pushedAt":"2023-10-10T20:38:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"update bcftools path","shortMessageHtmlLink":"update bcftools path"}},{"before":"26077bff5a1c01f7d45233eb14b998712885129a","after":"98aee83a0d7b0fdfbf01c82d8f15a13460bae365","ref":"refs/heads/cp1.v2.3","pushedAt":"2023-08-28T15:51:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"add charger","shortMessageHtmlLink":"add charger"}},{"before":"f2e3a6b04352f842568fff1d9813e774844a0ad3","after":"26077bff5a1c01f7d45233eb14b998712885129a","ref":"refs/heads/cp1.v2.3","pushedAt":"2023-08-28T15:08:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"version passing the first test","shortMessageHtmlLink":"version passing the first test"}},{"before":"38af7fddea7bb3d2a62f2a59f7a49e736b221c70","after":"f2e3a6b04352f842568fff1d9813e774844a0ad3","ref":"refs/heads/cp1.v2.3","pushedAt":"2023-08-25T17:37:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"add f steps for charg","shortMessageHtmlLink":"add f steps for charg"}},{"before":null,"after":"38af7fddea7bb3d2a62f2a59f7a49e736b221c70","ref":"refs/heads/cp1.v2.3","pushedAt":"2023-08-24T14:13:56.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"fix step 11","shortMessageHtmlLink":"fix step 11"}},{"before":"44323fbd0217bf835274bdbd0ca168a06c975099","after":"38af7fddea7bb3d2a62f2a59f7a49e736b221c70","ref":"refs/heads/cp1.v2.2","pushedAt":"2023-06-08T16:12:33.054Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"fix step 11","shortMessageHtmlLink":"fix step 11"}},{"before":"8710023b732f7376721bb81f4cd775619d1fecbb","after":"44323fbd0217bf835274bdbd0ca168a06c975099","ref":"refs/heads/cp1.v2.2","pushedAt":"2023-06-08T03:01:42.690Z","pushType":"push","commitsCount":2,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"add af step","shortMessageHtmlLink":"add af step"}},{"before":"4ebaa94debc39a7cb08d4aaef703a1b25c99ed48","after":"293b4e503888faf99f57a07fb7a06ddcf15e09fc","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-06-07T03:37:32.510Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"fix memory issue","shortMessageHtmlLink":"fix memory issue"}},{"before":"3ee5c035986c50bcb313266df62b7a922328dd4c","after":"4ebaa94debc39a7cb08d4aaef703a1b25c99ed48","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-06-06T20:06:55.909Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"can run step 11","shortMessageHtmlLink":"can run step 11"}},{"before":"2ffaac87cc472a32956bb86dd799a8202a16dc02","after":"3ee5c035986c50bcb313266df62b7a922328dd4c","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-06-06T17:44:31.079Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"add readcount to each sample","shortMessageHtmlLink":"add readcount to each sample"}},{"before":"ef5c2c34e9ce8a35ebafcc8a7be306fbfee6fe3b","after":"8710023b732f7376721bb81f4cd775619d1fecbb","ref":"refs/heads/cp1.v2.2","pushedAt":"2023-06-06T16:31:13.979Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"check both tumor and normal has readcount","shortMessageHtmlLink":"check both tumor and normal has readcount"}},{"before":"b836fa3d91910742c953712cfeb592f5c9f2f15d","after":"ef5c2c34e9ce8a35ebafcc8a7be306fbfee6fe3b","ref":"refs/heads/cp1.v2.2","pushedAt":"2023-06-06T16:19:18.934Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"ignore #version","shortMessageHtmlLink":"ignore #version"}},{"before":"87e8a91beaaa46d6a70c4c71d89350ff6944694e","after":"b836fa3d91910742c953712cfeb592f5c9f2f15d","ref":"refs/heads/cp1.v2.2","pushedAt":"2023-06-06T15:54:46.121Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"increase memory to 200G for step 10","shortMessageHtmlLink":"increase memory to 200G for step 10"}},{"before":"f387fdd3b4f75b5d433e3be75c2a1a19d224c3a6","after":"87e8a91beaaa46d6a70c4c71d89350ff6944694e","ref":"refs/heads/cp1.v2.2","pushedAt":"2023-06-06T15:33:21.157Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"add af","shortMessageHtmlLink":"add af"}},{"before":null,"after":"f387fdd3b4f75b5d433e3be75c2a1a19d224c3a6","ref":"refs/heads/cp1.v2.2","pushedAt":"2023-06-01T15:49:32.242Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"add af","shortMessageHtmlLink":"add af"}},{"before":"d8a578c0d660aeb8704270cc9dd28d092aba4968","after":"2ffaac87cc472a32956bb86dd799a8202a16dc02","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-05-26T20:40:09.822Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"fix step 5 non-atgc filtering","shortMessageHtmlLink":"fix step 5 non-atgc filtering"}},{"before":"1d95db29d8cebbf12d5e7a38542f5b1052d064aa","after":"d8a578c0d660aeb8704270cc9dd28d092aba4968","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-05-24T20:24:11.929Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"fix non-ATCG error","shortMessageHtmlLink":"fix non-ATCG error"}},{"before":"76f863f137df9d054cc2dbd081742e46e5545ede","after":"1d95db29d8cebbf12d5e7a38542f5b1052d064aa","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-05-18T19:41:44.617Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"fix step 8","shortMessageHtmlLink":"fix step 8"}},{"before":"a58af43fc2426b3af98b707e0eab64d49bea2a22","after":"76f863f137df9d054cc2dbd081742e46e5545ede","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-05-18T01:36:09.127Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"two mafs: one for all and one for coding","shortMessageHtmlLink":"two mafs: one for all and one for coding"}},{"before":"d9d90ae264102a8e7862ae1c3733c24edb1ce3b4","after":"a58af43fc2426b3af98b707e0eab64d49bea2a22","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-05-17T21:11:58.270Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"remove large indel >=100 in vcf","shortMessageHtmlLink":"remove large indel >=100 in vcf"}},{"before":"acedc805ecada0bae864baeae23363a10d89781a","after":"d9d90ae264102a8e7862ae1c3733c24edb1ce3b4","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-05-16T01:57:06.561Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"update fork to 2 and memory to 100G for vep annotation","shortMessageHtmlLink":"update fork to 2 and memory to 100G for vep annotation"}},{"before":"910d2f58ac2fa94b4e6e5c40b58af73f4aff01da","after":"acedc805ecada0bae864baeae23363a10d89781a","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-05-15T15:40:11.016Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"change buffer size from 5000 to 50 for vep annotation","shortMessageHtmlLink":"change buffer size from 5000 to 50 for vep annotation"}},{"before":"14a3f5688f0b4179e78495741f6f234569337545","after":"910d2f58ac2fa94b4e6e5c40b58af73f4aff01da","ref":"refs/heads/cp1.v2.1","pushedAt":"2023-05-15T15:39:12.473Z","pushType":"push","commitsCount":1,"pusher":{"login":"caosgc33d","name":"Song Cao","path":"/caosgc33d","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6173616?s=80&v=4"},"commit":{"message":"change buffer size to 50 for vep annotation","shortMessageHtmlLink":"change buffer size to 50 for vep annotation"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD-ME4HwA","startCursor":null,"endCursor":null}},"title":"Activity ยท ding-lab/germlinewrapper"}