{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":463855545,"defaultBranch":"latest","name":"2022-database-covers","ownerLogin":"dib-lab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2022-02-26T13:07:15.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/1740697?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715781295.0","currentOid":""},"activityList":{"items":[{"before":"be35f674ce98a8ce3b0d8ed841a23d10392034e3","after":null,"ref":"refs/heads/minor_update","pushedAt":"2024-05-15T13:54:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"}},{"before":"1d3e8099ec65789f6515216c14b292ba79cbdff5","after":"a757d4b823f3486bccdde310196a3e4e897c5150","ref":"refs/heads/latest","pushedAt":"2024-05-14T21:52:26.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"Merge pull request #18 from dib-lab/minor_update\n\n[MRG] Minor fixes for downstream scripts","shortMessageHtmlLink":"Merge pull request #18 from dib-lab/minor_update"}},{"before":null,"after":"be35f674ce98a8ce3b0d8ed841a23d10392034e3","ref":"refs/heads/minor_update","pushedAt":"2024-05-14T18:58:05.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"Minor fixes for downstream scripts","shortMessageHtmlLink":"Minor fixes for downstream scripts"}},{"before":"158f62aede39620a88d93ac844dfa04cabf36695","after":"1d3e8099ec65789f6515216c14b292ba79cbdff5","ref":"refs/heads/latest","pushedAt":"2024-05-14T18:39:11.000Z","pushType":"pr_merge","commitsCount":8,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"Merge pull request #16 from dib-lab/berlin_trip\n\nMRG: fixes, code, and examples from my Berlin trip","shortMessageHtmlLink":"Merge pull request #16 from dib-lab/berlin_trip"}},{"before":"ab0f4da3c4bdab74ae5590170790bda17d1d236c","after":"77668a33e83875152fefc3f3aa0e1ab53adc2548","ref":"refs/heads/berlin_trip","pushedAt":"2024-05-14T18:34:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"minor fixes","shortMessageHtmlLink":"minor fixes"}},{"before":"151766a9349ff642c61c7f200fb383494c1e9971","after":"ab0f4da3c4bdab74ae5590170790bda17d1d236c","ref":"refs/heads/berlin_trip","pushedAt":"2024-05-14T18:30:24.000Z","pushType":"push","commitsCount":9,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"Merge branch 'latest' into berlin_trip","shortMessageHtmlLink":"Merge branch 'latest' into berlin_trip"}},{"before":"e6efbe6d779a9b484c9c12cfaed0bf025c12ccd0","after":"158f62aede39620a88d93ac844dfa04cabf36695","ref":"refs/heads/latest","pushedAt":"2024-05-14T18:27:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"Add arguement for user input and processing the entire db","shortMessageHtmlLink":"Add arguement for user input and processing the entire db"}},{"before":"c32c43eaaae716c404134d4089d9727cb89aaa04","after":"e6efbe6d779a9b484c9c12cfaed0bf025c12ccd0","ref":"refs/heads/latest","pushedAt":"2024-05-14T17:32:42.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"Merge pull request #17 from dib-lab/ctb_mods\n\nFixing possible conflict in ctb_mods and latest","shortMessageHtmlLink":"Merge pull request #17 from dib-lab/ctb_mods"}},{"before":"181836cc24bb9c27dee0edb444e67bf73402d713","after":"b839c85fb7f6df7d07f1254b43998c062e033daa","ref":"refs/heads/ctb_mods","pushedAt":"2024-05-14T17:30:07.000Z","pushType":"push","commitsCount":12,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"Merge branch 'latest' of github.com:dib-lab/2022-database-covers into ctb_mods","shortMessageHtmlLink":"Merge branch 'latest' of github.com:dib-lab/2022-database-covers into…"}},{"before":"171b2f80e54532f4771243ff41aca6e2c32d9fcf","after":"181836cc24bb9c27dee0edb444e67bf73402d713","ref":"refs/heads/ctb_mods","pushedAt":"2024-05-14T17:24:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"updating the traveling and make-pangenome-sketch script","shortMessageHtmlLink":"updating the traveling and make-pangenome-sketch script"}},{"before":"963ff38cbadd3a88f95a1a425b9d9d88d3d34c65","after":"171b2f80e54532f4771243ff41aca6e2c32d9fcf","ref":"refs/heads/ctb_mods","pushedAt":"2024-05-14T16:32:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"latest scripts","shortMessageHtmlLink":"latest scripts"}},{"before":"1c1dcaa9285cbfededa4696550c4a1ec1c3d1548","after":"151766a9349ff642c61c7f200fb383494c1e9971","ref":"refs/heads/berlin_trip","pushedAt":"2024-05-07T15:50:29.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"add examples","shortMessageHtmlLink":"add examples"}},{"before":null,"after":"1c1dcaa9285cbfededa4696550c4a1ec1c3d1548","ref":"refs/heads/berlin_trip","pushedAt":"2024-05-07T08:49:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"misc updates","shortMessageHtmlLink":"misc updates"}},{"before":"4dda1da44a139f65c49f4219d5e7cb437263b752","after":"c32c43eaaae716c404134d4089d9727cb89aaa04","ref":"refs/heads/latest","pushedAt":"2024-05-04T19:15:25.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"minor cleanup","shortMessageHtmlLink":"minor cleanup"}},{"before":"fd8af945af4b4bc6341ddfaed4151119c30a215a","after":null,"ref":"refs/heads/pangenome","pushedAt":"2024-05-04T19:06:18.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"}},{"before":"bed1286858aedfc0287a1dc0197ba57842727ecd","after":"4dda1da44a139f65c49f4219d5e7cb437263b752","ref":"refs/heads/latest","pushedAt":"2024-05-04T19:06:15.000Z","pushType":"pr_merge","commitsCount":21,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"Merge pull request #15 from dib-lab/pangenome\n\nMRG: add pangenome foo into default branch `latest`, including Colton's scripts.","shortMessageHtmlLink":"Merge pull request #15 from dib-lab/pangenome"}},{"before":"65c90ca29693cd2c8103df43045a3e3112ee5d98","after":"fd8af945af4b4bc6341ddfaed4151119c30a215a","ref":"refs/heads/pangenome","pushedAt":"2024-05-04T19:05:25.000Z","pushType":"pr_merge","commitsCount":13,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"Merge pull request #14 from ccbaumler/scripts\n\nMRG: add colton scripts into pangenome branch.","shortMessageHtmlLink":"Merge pull request #14 from ccbaumler/scripts"}},{"before":"a864ff5b30285c186e957405e96cfad3f8a8145e","after":"963ff38cbadd3a88f95a1a425b9d9d88d3d34c65","ref":"refs/heads/ctb_mods","pushedAt":"2024-05-02T21:36:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"attemping protein seqs, fix bug (reliant on ident version)","shortMessageHtmlLink":"attemping protein seqs, fix bug (reliant on ident version)"}},{"before":"5d4b2e40e0ddbfe593590be706c5fdb0f7cf15fe","after":"a864ff5b30285c186e957405e96cfad3f8a8145e","ref":"refs/heads/ctb_mods","pushedAt":"2024-05-02T17:12:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"fixed pairwise dataprep in script traveling-pairs","shortMessageHtmlLink":"fixed pairwise dataprep in script traveling-pairs"}},{"before":"8afd512dfc0bb2ff216476c7412bcdfcd509a275","after":"5d4b2e40e0ddbfe593590be706c5fdb0f7cf15fe","ref":"refs/heads/ctb_mods","pushedAt":"2024-05-01T23:00:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"updating existing scripts to work with grep and creating pairwise comp","shortMessageHtmlLink":"updating existing scripts to work with grep and creating pairwise comp"}},{"before":"ff7ab3e0a603be43f1cfab661aa7c3ae3e22751c","after":"65c90ca29693cd2c8103df43045a3e3112ee5d98","ref":"refs/heads/pangenome","pushedAt":"2024-04-27T20:09:01.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"Merge pull request #10 from ccbaumler/pangenome\n\n[MRG] Adding abundance to output and creating a csv file for transparency and plot generation","shortMessageHtmlLink":"Merge pull request #10 from ccbaumler/pangenome"}},{"before":"bd0b3b7317d71427e4e29d387df96aa79d9ca49c","after":"8afd512dfc0bb2ff216476c7412bcdfcd509a275","ref":"refs/heads/ctb_mods","pushedAt":"2024-04-25T21:48:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"add grep-like manifest search, question user for full db process, beautify output","shortMessageHtmlLink":"add grep-like manifest search, question user for full db process, bea…"}},{"before":"315e089fa9b17ef15b28c0f99bf8fde2640d9c92","after":"bd0b3b7317d71427e4e29d387df96aa79d9ca49c","ref":"refs/heads/ctb_mods","pushedAt":"2024-04-25T18:44:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"include total hash count in and not in metagenome and raise error for incorrect k value","shortMessageHtmlLink":"include total hash count in and not in metagenome and raise error for…"}},{"before":"a3c90ed446b14ea2d8822f3f2ff0c4eb5db5035b","after":"315e089fa9b17ef15b28c0f99bf8fde2640d9c92","ref":"refs/heads/ctb_mods","pushedAt":"2024-04-11T19:28:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ccbaumler","name":"Colton Baumler","path":"/ccbaumler","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/63077899?s=80&v=4"},"commit":{"message":"add total hashes print statements","shortMessageHtmlLink":"add total hashes print statements"}},{"before":"487dbf6e47b4c3f3d7e958299f9f350561572da2","after":"a3c90ed446b14ea2d8822f3f2ff0c4eb5db5035b","ref":"refs/heads/ctb_mods","pushedAt":"2024-04-11T17:55:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"update to working","shortMessageHtmlLink":"update to working"}},{"before":"e5121eb98ec3c6528a52bf4deb92894cd9f910ad","after":"487dbf6e47b4c3f3d7e958299f9f350561572da2","ref":"refs/heads/ctb_mods","pushedAt":"2024-04-11T17:44:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"fix more things","shortMessageHtmlLink":"fix more things"}},{"before":null,"after":"e5121eb98ec3c6528a52bf4deb92894cd9f910ad","ref":"refs/heads/ctb_mods","pushedAt":"2024-04-11T16:40:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"minor changes & comments to process_ss.py","shortMessageHtmlLink":"minor changes & comments to process_ss.py"}},{"before":"5dfe2811b929244db613df478d8cb1ff82ecd85c","after":"bed1286858aedfc0287a1dc0197ba57842727ecd","ref":"refs/heads/latest","pushedAt":"2024-02-27T16:28:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"upd more","shortMessageHtmlLink":"upd more"}},{"before":"595e2d1bf8b61b0f521b5154f7dde1c09690ebf6","after":"5dfe2811b929244db613df478d8cb1ff82ecd85c","ref":"refs/heads/latest","pushedAt":"2024-02-27T16:28:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"update simple use case a bit","shortMessageHtmlLink":"update simple use case a bit"}},{"before":"b9620db43cdedb00afde75eb44698b0db04128f0","after":"595e2d1bf8b61b0f521b5154f7dde1c09690ebf6","ref":"refs/heads/latest","pushedAt":"2024-02-27T16:26:34.000Z","pushType":"pr_merge","commitsCount":10,"pusher":{"login":"ctb","name":"C. Titus Brown","path":"/ctb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/51016?s=80&v=4"},"commit":{"message":"Merge pull request #4 from dib-lab/pangenome\n\nWIP: code to build pangenome sketches","shortMessageHtmlLink":"Merge pull request #4 from dib-lab/pangenome"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAESpyYoAA","startCursor":null,"endCursor":null}},"title":"Activity · dib-lab/2022-database-covers"}