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R script crashes when codon_stationary_distribution has only one column #90

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jasondk opened this issue Mar 25, 2024 · 2 comments
Open

R script crashes when codon_stationary_distribution has only one column #90

jasondk opened this issue Mar 25, 2024 · 2 comments
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jasondk commented Mar 25, 2024

Duplicating the single column fixed it for me
@jasondk jasondk added the bug Something isn't working label Mar 25, 2024
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jasondk commented Mar 25, 2024

In utils/fitness_profile_finder.R, it crashes on:

Error in colSums(freqs[, -ncol(freqs)]) :
'x' must be an array of at least two dimensions

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jasondk commented Mar 25, 2024 •
edited

To reproduce the error: python3 SLiMTree.py -n 100 -v 0.0000025 -b 10 -r 0 -g 1 -k 100 simple-tree.txt codons3.csv -f start.fasta.txt
codons3.csv
simple-tree.txt
start.fasta.txt

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