tutorials.md

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page	Tutorials	/tutorials/

Week 1: Jan 8 - 12

Wrangling sequences and trees

Week 2: Jan 15 - 19

Bioinformatic pipelines for genomic sequencing data

Week 3: Jan 22 - 26

MCMC in BEAST 2

Week 4: Jan 29 - Feb 2

Discrete trait phylogeography

Week 5: Feb 5 - 9

Coalescent Skylines in BEAST

Bonus Lab: Structured coalescent inference with MASCOT

Week 6: Feb 12 - 16

Transmission tree reconstruction with SCOTTI

Week 7: Feb 19 - 23

Detecting recombination in RDP4

Week 8: Feb 26 - March 1

WGS pipelines for SNP-based phylogenomics

Week 9: March 4 - 8

Estimating the fitness of antimicrobial resistance mutations

Week 10: March 18 - 22

SIR epidemiological models

Week 11: March 25 - 29

Simulating epidemics and trees with MASTER

Week 12: April 1 - 5

Fitting SIR models to phylogenies using PhyDyn

Week 13: April 15 - 19

Tracking SARS-CoV-2 imports using massive genomic datasets