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Phylogenetic insights into infectious disease epidemiology
No lecture Jan 15th: MLK Day
Bioinformatic pipelines for next-generation sequencing data
The statistical underpinnings of maximum likelihood and Bayesian inference
Exploring the origin and spread of epidemics with phylogeography
Coalescent theory and the population genetics of molecular evolution
Inferring transmission trees and who's infecting whom
Non-tree like evolution: Detecting and accounting for recombination
Recombine often or perish: Genome evolution in bacterial and eukaryotic pathogens
Multi-type birth-death models and adaptive molecular evolution
Modeling transmission dynamics with SIR models
Video link
Stochastic models for simulation and inference
Video link
Phylodynamics: phylogenetics meets epidemiological modeling
Video link
After the data deluge: scaling strategies for massive genomic datasets
Predicting the (very near) future: forecasting pathogen evolution