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stag.py syntax error #4

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lilypeck opened this issue Feb 22, 2023 · 1 comment
Open

stag.py syntax error #4

lilypeck opened this issue Feb 22, 2023 · 1 comment

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@lilypeck
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Hi

Thanks for this great tool. I have used OrthoFinder lots in the past.

I have installed STAG-1.0.0 from the releases page

And when I run the test dataset, I get an invalid syntax error?

python stag.py ExampleData/Fungi_SpeciesMap.txt ExampleData/Fungi_Gene_Trees/
File "stag.py", line 196
    except UnrecognisedGene, e:
                           ^
SyntaxError: invalid syntax

I have also installed FastME into the same environment

(stag) [l----@login-c stag]$ fastme -v
FastME 2.1.6.1

Do you know what's causing this?

Thanks

Lily

@jroussea
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Hi
I had the same problem and fixed it running STAG with python 2.7.

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