{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":38238163,"defaultBranch":"master","name":"OrthoFinder","ownerLogin":"davidemms","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2015-06-29T09:03:34.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/13098041?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1684263801.749836","currentOid":""},"activityList":{"items":[{"before":"350fbe36a1ab90b447227a6f93071ea16b1c4523","after":"01a89f188d0723863968d204fee17daa6dd3a523","ref":"refs/heads/linear_species_addition","pushedAt":"2024-03-01T11:43:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Name OG/HOG profiles","shortMessageHtmlLink":"Name OG/HOG profiles"}},{"before":"a3e3103d5af63310292b45a6460b58d79f1cb3c5","after":"350fbe36a1ab90b447227a6f93071ea16b1c4523","ref":"refs/heads/linear_species_addition","pushedAt":"2024-02-29T16:16:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Handle HOGs/OGs as base for profiles","shortMessageHtmlLink":"Handle HOGs/OGs as base for profiles"}},{"before":"3d1338c1384f2c9672e4b76744dab73482e0207c","after":"a3e3103d5af63310292b45a6460b58d79f1cb3c5","ref":"refs/heads/linear_species_addition","pushedAt":"2024-02-27T22:02:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Correct assigning of genes to HOGs","shortMessageHtmlLink":"Correct assigning of genes to HOGs"}},{"before":"84acee116dfa061b7d4bb097f40292649c06ef10","after":"3d1338c1384f2c9672e4b76744dab73482e0207c","ref":"refs/heads/linear_species_addition","pushedAt":"2024-02-09T12:43:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Correct queues","shortMessageHtmlLink":"Correct queues"}},{"before":"abc5aed0f877cdd97c38225e47f3301ac495103a","after":"84acee116dfa061b7d4bb097f40292649c06ef10","ref":"refs/heads/linear_species_addition","pushedAt":"2023-06-01T19:13:15.409Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Ortholog writing parallelisation","shortMessageHtmlLink":"Ortholog writing parallelisation"}},{"before":"c85ab1df311fb4fe8d11c613382ad8914de8d896","after":"04455a31c12f361b34ae2791253a546338678cec","ref":"refs/heads/master","pushedAt":"2023-05-31T07:40:30.623Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Don't delete m matrix","shortMessageHtmlLink":"Don't delete m matrix"}},{"before":"4b7654f47fd6d4db731cfa33b2ad04f8162ed156","after":"abc5aed0f877cdd97c38225e47f3301ac495103a","ref":"refs/heads/linear_species_addition","pushedAt":"2023-05-17T07:49:41.500Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Add --assign notes to REDME","shortMessageHtmlLink":"Add --assign notes to REDME"}},{"before":"bc18fe5ebf5cf477c7a7db0ba6e40eb6f7cf70f0","after":"c85ab1df311fb4fe8d11c613382ad8914de8d896","ref":"refs/heads/master","pushedAt":"2023-05-15T17:16:38.456Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Update version number","shortMessageHtmlLink":"Update version number"}},{"before":"a2967e96882e1dc81a14b1426ff313eaee3a1c1e","after":"4b7654f47fd6d4db731cfa33b2ad04f8162ed156","ref":"refs/heads/linear_species_addition","pushedAt":"2023-05-15T07:17:50.632Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Only check blast for dendroblast. iOGs4","shortMessageHtmlLink":"Only check blast for dendroblast. iOGs4"}},{"before":"b0d305940cbab40f37889e7f2e748c04dab8df7f","after":"a2967e96882e1dc81a14b1426ff313eaee3a1c1e","ref":"refs/heads/linear_species_addition","pushedAt":"2023-05-12T19:46:06.252Z","pushType":"push","commitsCount":4,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Write stats for phylogenetic OGs","shortMessageHtmlLink":"Write stats for phylogenetic OGs"}},{"before":"9f215d607c2c2522f8f1e471f3b5c382f582f8fd","after":"b0d305940cbab40f37889e7f2e748c04dab8df7f","ref":"refs/heads/linear_species_addition","pushedAt":"2023-04-29T16:09:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Write & read N0.ids.tsv","shortMessageHtmlLink":"Write & read N0.ids.tsv"}},{"before":"88dfa02ea262a550847da66dd573fc04e144345c","after":"9f215d607c2c2522f8f1e471f3b5c382f582f8fd","ref":"refs/heads/linear_species_addition","pushedAt":"2023-04-28T07:34:04.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Tidy terminal output","shortMessageHtmlLink":"Tidy terminal output"}},{"before":"570086787dbd17c0b7a39562cc4001e8c2c964d7","after":"88dfa02ea262a550847da66dd573fc04e144345c","ref":"refs/heads/linear_species_addition","pushedAt":"2023-04-24T06:41:41.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Fix cmd formatting","shortMessageHtmlLink":"Fix cmd formatting"}},{"before":"e449f1f78bcb59c9929434d8a29fad3d5f449cf4","after":"570086787dbd17c0b7a39562cc4001e8c2c964d7","ref":"refs/heads/linear_species_addition","pushedAt":"2023-04-19T06:54:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Cluster between-core clades one-by-one","shortMessageHtmlLink":"Cluster between-core clades one-by-one"}},{"before":"92dcec4eea70eb026ff4702160faff8675303d64","after":"e449f1f78bcb59c9929434d8a29fad3d5f449cf4","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-30T17:32:57.869Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Fix alignment of tree/msa files","shortMessageHtmlLink":"Fix alignment of tree/msa files"}},{"before":"5f3609ddbed9362520918184cf5352962fa8400e","after":"92dcec4eea70eb026ff4702160faff8675303d64","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-30T07:59:45.945Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Infer remaining MSA","shortMessageHtmlLink":"Infer remaining MSA"}},{"before":"ae22f8ec9e255e8af2742a085f62de26a877885b","after":"5f3609ddbed9362520918184cf5352962fa8400e","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-29T07:30:17.976Z","pushType":"push","commitsCount":2,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Fix clade-specific OGs, handle iogs4","shortMessageHtmlLink":"Fix clade-specific OGs, handle iogs4"}},{"before":"f7042f31db84e759d12779df719ab693af671965","after":"ae22f8ec9e255e8af2742a085f62de26a877885b","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-27T07:36:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Complete workflow with user species tree","shortMessageHtmlLink":"Complete workflow with user species tree"}},{"before":"4ae989b7f028bf967b9a1b9e0d348a4869871f88","after":"f7042f31db84e759d12779df719ab693af671965","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-26T19:24:06.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Infer clade-specific orthogroups v2","shortMessageHtmlLink":"Infer clade-specific orthogroups v2"}},{"before":"3bc869c7cee1e4352e7bd9f72616cfeb9e44993e","after":"4ae989b7f028bf967b9a1b9e0d348a4869871f88","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-18T19:36:01.000Z","pushType":"push","commitsCount":5,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Infer clade-specific orthogroups","shortMessageHtmlLink":"Infer clade-specific orthogroups"}},{"before":"32fa3c37f43aaacd70b0fa698ca7a3b2be46c603","after":"3bc869c7cee1e4352e7bd9f72616cfeb9e44993e","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-18T09:43:07.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"save space option - compress orthologs","shortMessageHtmlLink":"save space option - compress orthologs"}},{"before":"e2e86c57d163c7524595f45df861969711cee730","after":"32fa3c37f43aaacd70b0fa698ca7a3b2be46c603","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-14T18:55:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Permit follow-ons from fast-add","shortMessageHtmlLink":"Permit follow-ons from fast-add"}},{"before":"165e1ebe10c5c276dbbc819372267e71e2e986ee","after":"e2e86c57d163c7524595f45df861969711cee730","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-14T18:38:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Single diamond search","shortMessageHtmlLink":"Single diamond search"}},{"before":"5f3c7bbd0a5a6a483fda21bca29797d6cd6ce937","after":"165e1ebe10c5c276dbbc819372267e71e2e986ee","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-12T19:29:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"n_init auto only from sklearn>= 1.2","shortMessageHtmlLink":"n_init auto only from sklearn>= 1.2"}},{"before":null,"after":"5f3c7bbd0a5a6a483fda21bca29797d6cd6ce937","ref":"refs/heads/linear_species_addition","pushedAt":"2023-03-12T19:05:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Remove explicit calls to shoot","shortMessageHtmlLink":"Remove explicit calls to shoot"}},{"before":"4e4bfc3fd9dae2b361fde4bc2d3a7ac56d9ba431","after":"bc18fe5ebf5cf477c7a7db0ba6e40eb6f7cf70f0","ref":"refs/heads/master","pushedAt":"2023-03-11T18:58:15.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"davidemms","name":"David Emms","path":"/davidemms","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13098041?s=80&v=4"},"commit":{"message":"Update ulimit warning","shortMessageHtmlLink":"Update ulimit warning"}}],"hasNextPage":false,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAECbOgDwA","startCursor":null,"endCursor":null}},"title":"Activity ยท davidemms/OrthoFinder"}