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<!DOCTYPE html>
<html lang="en">
<head>
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<meta name="description" content="Datasnakes Website">
<meta name="author" content="Robert Gilmore and Shaurita Hutchins">
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<title>Projects | OrthoEvolution</title>
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<h2 class="section-heading">Project Description</h2>
<p class="large text-muted">The <b><a href="https://github.com/datasnakes/OrthoEvolution"> OrthoEvolution</a></b> python package is an easy to use and comprehensive package which aids in the analysis and visualization of comparative genetics & related bioinformatics projects.</p>
<br>
<p class="large text-muted">The current implementation of this package places an emphasis on the inference of orthologs using NCBI's blast, various sequence alignment strategies, and phylogenetics analyses including PAML, PhymL, ete3, and more tools.</p>
<br>
<p class="large text-muted">The goal of this project is to create a pipeline framework for current (inference of orthologs) and future (RNA-seek) projects. The Cookies, Manager, Pipeline, and Tools modules act as a framework for our workflow, while the Orthologs module provides access to specific functions for our various ortholog inference projects.</p>
<br>
<p class="large text-muted">Check out our <a href="https://github.com/datasnakes/OrthoEvolution/wiki">wiki docs</a> and our <a href="http://OrthoEvolution.readthedocs.io/en/master/">read the docs</a>!</p>
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<p class="large text-muted">Easy Installation</p>
<p class="large text-muted"><code>pip install ortho-evol</code></p>
<br/>
<p class="large text-muted">For development mode installation:</p>
<p class="large text-muted">1. <code>git clone http://github.com/datasnakes/OrthoEvolution</code></p>
<p class="large text-muted">2. <code>cd OrthoEvolution</code></p>
<p class="large text-muted">3. <code>pip install -e .</code></p>
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