/
helpers.py
502 lines (415 loc) · 16.9 KB
/
helpers.py
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import re
import sys
from dataclasses import dataclass
from enum import Enum, unique
from traceback import format_exc
from typing import NewType, Optional, Any, Tuple, Union, Pattern
from pystrict import strict
#
# here we do some data typing that should help
#
@dataclass
class OntoIri:
"""
Holds an ontology IRI
Attributes:
iri: the ontology IRI
hashtag: True if "#" is used to separate elements, False if element name is appended after "/"
"""
iri: str
hashtag: bool
ContextType = NewType("ContextType", dict[str, OntoIri])
def LINE() -> int:
return sys._getframe(1).f_lineno
@strict
class IriTest:
__iri_regexp = re.compile("^(http)s?://([\\w\\.\\-~]+)?(:\\d{,6})?(/[\\w\\-~]+)*(#[\\w\\-~]*)?")
@classmethod
def test(cls, val: str) -> bool:
m = cls.__iri_regexp.match(val)
return m.span()[1] == len(val) if m else False
@strict
class BaseError(Exception):
"""
A basic error class
"""
_message: str
def __init__(self, message: str) -> None:
"""
Constructor for error message
:param message: error message string
"""
super().__init__()
self._message = message
def __str__(self) -> str:
"""
Convert to string
:return: stringyfied error message
"""
return self._message + "\n\n" + format_exc()
@property
def message(self) -> str:
return self._message
@unique
class Actions(Enum):
Create = 1
Read = 2
Update = 3
Delete = 4
@unique
class Cardinality(Enum):
C_1 = "1"
C_0_1 = "0-1"
C_1_n = "1-n"
C_0_n = "0-n"
@strict
class ContextIterator:
_context: 'Context'
_prefixes: list[str]
_index: int
def __init__(self, context: 'Context'):
self._context = context
self._prefixes = [x for x in self._context.context]
self._index = 0
def __next__(self) -> Tuple[Optional[str], Optional[OntoIri]]:
if len(self._context.context) == 0 and self._index == 0:
return None, None
elif self._index < len(self._context.context):
tmp = self._prefixes[self._index]
self._index += 1
return tmp, self._context.context[tmp]
else:
raise StopIteration
@strict
class Context:
"""
This class holds a JSON-LD context with the ontology IRI's and the associated prefixes
"""
_context: ContextType
_rcontext: dict[str, str]
_exp: Pattern[str]
common_ontologies = ContextType({
"foaf": OntoIri("http://xmlns.com/foaf/0.1/", False),
"dc": OntoIri("http://purl.org/dc/elements/1.1/", False),
"dcterms": OntoIri("http://purl.org/dc/terms/", False),
"dcmi": OntoIri("http://purl.org/dc/dcmitype/", False),
"skos": OntoIri("http://www.w3.org/2004/02/skos/core", True),
"bibtex": OntoIri("http://purl.org/net/nknouf/ns/bibtex", True),
"bibo": OntoIri("http://purl.org/ontology/bibo/", False),
"cidoc": OntoIri("http://purl.org/NET/cidoc-crm/core", True),
"schema": OntoIri("https://schema.org/", False),
"edm": OntoIri("http://www.europeana.eu/schemas/edm/", False),
"ebucore": OntoIri("http://www.ebu.ch/metadata/ontologies/ebucore/ebucore", True)
})
knora_ontologies = ContextType({
"knora-api": OntoIri("http://api.knora.org/ontology/knora-api/v2", True),
"salsah-gui": OntoIri("http://api.knora.org/ontology/salsah-gui/v2", True)
})
base_ontologies = ContextType({
"rdf": OntoIri("http://www.w3.org/1999/02/22-rdf-syntax-ns", True),
"rdfs": OntoIri("http://www.w3.org/2000/01/rdf-schema", True),
"owl": OntoIri("http://www.w3.org/2002/07/owl", True),
"xsd": OntoIri("http://www.w3.org/2001/XMLSchema", True)
})
def __is_iri(self, val: str) -> bool:
"""
Test if string has a valid IRI pattern
:param val: Input string
:return: True, if val corresponds to IRI pattern
"""
m = self._exp.match(val)
return m.span()[1] == len(val) if m else False
def __init__(self, context: Optional[dict[str, str]] = None):
"""
THe Constructor of the Context. It takes one optional parameter which as a dict of
prefix - ontology-iri pairs. If the hashtag "#" is used to append element name, the
ontology-iri *must* end with "#"!
:param context: A dict of prefix - ontology-iri pairs
"""
# regexp to test for a complete IRI (including fragment identifier)
self._exp = re.compile("^(http)s?://([\\w\\.\\-~]+)?(:\\d{,6})?(/[\\w\\-~]+)*(#[\\w\\-~]*)?")
self._context = ContextType({})
# add ontologies from context, if any
if context:
for prefix, onto in context.items():
self._context[prefix] = OntoIri(onto.removesuffix('#'), onto.endswith('#') or onto.endswith('/v2'))
# add standard ontologies (rdf, rdfs, owl, xsl)
for k, v in self.base_ontologies.items():
if not self._context.get(k):
self._context[k] = v
# add DSP-API internal ontologies (knora-api, salsah-gui)
for k, v in self.knora_ontologies.items():
if not self._context.get(k):
self._context[k] = v
self._rcontext = {v.iri: k for k, v in self._context.items()}
def __len__(self) -> int:
return len(self._context)
def __getitem__(self, key: str) -> OntoIri:
return self._context[key]
def __setitem__(self, key: str, value: OntoIri) -> None:
self._context[key] = value
self._rcontext[value.iri] = key
def __delitem__(self, key: str) -> None:
iri = self._context[key].iri
del self._context[key].iri
del self._rcontext[iri]
def __contains__(self, key: str) -> bool:
return key in self._context
def __iter__(self) -> ContextIterator:
return ContextIterator(self)
def __str__(self) -> str:
output = "Context:\n"
for prefix, val in self._context.items():
output += " " + prefix + ": " + val.iri + "\n"
return output
#
# now we have a lot of getters/setters
#
@property
def context(self) -> ContextType:
return self._context
@context.setter
def context(self, value: ContextType) -> None:
"""
Setter function for the context out of a dict in the form { prefix1 : iri1, prefix2, iri2, …}
:param value: Dictionary of context
:return: None
"""
if value is not None and isinstance(value, ContextType):
self._context = value
else:
raise BaseError("Error in parameter to context setter")
@property
def rcontext(self) -> dict[str, str]:
return self._rcontext
def add_context(self, prefix: str, iri: Optional[str] = None) -> None:
"""
Add a new context to a context instance
:param prefix: The prefix that should be used
:param iri: The IRI that belongs to this context prefix
:return: None
"""
if iri is None:
if prefix in self.knora_ontologies:
return
if prefix in self.base_ontologies:
return
if prefix in self.common_ontologies:
self._context[prefix] = self.common_ontologies[prefix]
else:
if iri.endswith("#"):
iri = iri[:-1]
self._context[prefix] = OntoIri(iri, True)
else:
self._context[prefix] = OntoIri(iri, False)
self._rcontext[iri] = prefix
def iri_from_prefix(self, prefix: str) -> Optional[str]:
"""
Returns the full IRI belonging to this prefix, without trailing "#"!
:param prefix: Prefix of the context entry
:return: The full IRI without trailing "#"
"""
# if self.__is_iri(prefix):
if IriTest.test(prefix):
return prefix
if self._context.get(prefix) is not None:
return self._context.get(prefix).iri
else:
return None
def prefix_from_iri(self, iri: str) -> Optional[str]:
"""
Get the IRI from a full context that has or has not a trailing "#". It first searches in the normal list
of contexted. If the iri is not found there, it looks in the list common (external) ontologies. If the
ontology is found there, this ontology is added to the list of known ontology and it's prefix is returned.
If nothing is found, None is returns
:param iri: The full IRI with or without trailing "#", or
:return: the prefix of this context element, or None, if not found
"""
# if not self.__is_iri(iri):
if not IriTest.test(iri):
raise BaseError("String does not conform to IRI patter: " + iri)
if iri.endswith("#"):
iri = iri[:-1]
result = self._rcontext.get(iri)
if result is None:
entrylist = list(filter(lambda x: x[1].iri == iri, self.common_ontologies.items()))
if len(entrylist) == 1:
entry = entrylist[0]
self._context[entry[0]] = entry[1] # add to list of prefixes used
self._rcontext[entry[1].iri] = entry[0]
result = entry[0]
else:
tmp = iri.split('/')
if tmp[-1] == "v2":
#
# we have a knora ontology name "http://server/ontology/shortcode/shortname/v2"
self._context[tmp[-2]] = OntoIri(iri, True) # add to list of prefixes used
self._rcontext[iri] = tmp[-2]
else:
raise BaseError("Iri cannot be resolved to a well-known prefix!")
return result
def get_qualified_iri(self, val: Optional[str]) -> Optional[str]:
"""
Given an IRI, its fully qualified name is returned.
Args:
val: The input IRI
Returns:
the fully qualified IRI
"""
if not val:
return None
if IriTest.test(val):
return val
tmp = val.split(':')
if len(tmp) < 2:
raise BaseError("There is no separator to identify the prefix: " + val)
iri_info = self._context.get(tmp[0])
if iri_info is None:
entrylist = list(filter(lambda x: x[1].iri == tmp[0], self.common_ontologies.items()))
if len(entrylist) == 1:
entry = entrylist[0]
self._context[entry[0]] = entry[1] # add to list of prefixes used
self._rcontext[entry[1].iri] = entry[0]
iri_info = entry[1]
else:
raise BaseError("Ontology not known! Cannot generate fully qualified IRI")
if iri_info.hashtag:
return iri_info.iri + '#' + tmp[1]
else:
return iri_info.iri + tmp[1]
def get_prefixed_iri(self, iri: Optional[str]) -> Optional[str]:
"""
We reduce a fully qualified IRI to a short one in the form "prefix:name"
:param iri: Fully qualified IRI
:return: Return short from of IRI ("prefix:name")
"""
if iri is None:
return None
# check if the iri already has the form "prefix:name"
m = re.match("([\\w-]+):([\\w-]+)", iri)
if m and m.span()[1] == len(iri):
return iri
if not IriTest.test(iri):
raise BaseError(f"The IRI '{iri}' does not conform to the IRI pattern.")
split_point = iri.find('#')
if split_point == -1:
split_point = iri.rfind('/')
onto_part = iri[:split_point + 1]
element = iri[split_point + 1:]
else:
onto_part = iri[:split_point]
element = iri[split_point + 1:]
prefix = self._rcontext.get(onto_part)
if prefix is None:
entry_list = list(filter(lambda x: x[1].iri == onto_part, self.common_ontologies.items()))
if len(entry_list) == 1:
entry = entry_list[0]
self._context[entry[0]] = entry[1] # add to list of prefixes used
self._rcontext[entry[1].iri] = entry[0]
prefix = entry[0]
else:
return None
return prefix + ':' + element
def reduce_iri(self, iri_str: str, onto_name: Optional[str] = None) -> str:
"""
Reduces an IRI to the form that is used within the definition JSON file. It expects the context object to have
entries (prefixes) for all IRIs:
- if it's an external IRI and the ontology can be extracted as prefix it returns: "prefix:name"
- if it's in the same ontology, it returns: ":name"
- if it's a system ontology ("knora-api" or "salsah-gui") it returns: "name"
- if the IRI can't be reduced, it's returned as is
Args:
iri_str: the IRI that should be reduced
onto_name: the name of the ontology
Returns:
The reduced IRI if possible otherwise the fully qualified IRI
"""
knora_api = self.prefix_from_iri("http://api.knora.org/ontology/knora-api/v2#")
salsah_gui = self.prefix_from_iri("http://api.knora.org/ontology/salsah-gui/v2#")
if IriTest.test(iri_str):
if self.get_prefixed_iri(iri_str):
iri_str = self.get_prefixed_iri(iri_str)
tmp = iri_str.split(':')
if tmp[0] == knora_api or tmp[0] == salsah_gui:
return tmp[1]
elif tmp[0] == onto_name:
return ':' + tmp[1]
else:
return iri_str
def toJsonObj(self) -> dict[str, str]:
"""
Return a python object that can be jsonfied...
:return: Object to be jsonfied
"""
return {prefix: oinfo.iri + '#' if oinfo.hashtag else oinfo.iri
for prefix, oinfo in self._context.items()}
def get_externals_used(self) -> dict[str, str]:
exclude = ["rdf", "rdfs", "owl", "xsd", "knora-api", "salsah-gui"]
return {prefix: onto.iri for prefix, onto in self._context.items() if prefix not in exclude}
def print(self) -> None:
for a in self._context.items():
print(a[0] + ': "' + a[1].iri + '"')
class LastModificationDate:
"""
Class to hold and process the last modification date of a ontology
"""
_last_modification_date: str
def __init__(self, val: Any):
"""
The constructor works for different inputs:
- a string holding the modification date
- an instance of "LastModificationDate"
- json-ld construct of the form { "@type": "xsd:dateTimeStamp", "@value": "date-str" }
:param val: datetimestamp as string, instance of "LastModificationDate" or json-ld construct
"""
if isinstance(val, str):
self._last_modification_date = val
elif isinstance(val, LastModificationDate):
self._last_modification_date = str(val)
else:
if val.get("@type") is not None and val.get("@type") == "xsd:dateTimeStamp":
self._last_modification_date = val["@value"]
else:
raise BaseError("Invalid LastModificationDate")
def __eq__(self, other: Union[str, 'LastModificationDate']) -> bool:
if isinstance(other, str):
other = LastModificationDate(other)
return self._last_modification_date == other._last_modification_date
def __lt__(self, other: 'LastModificationDate') -> bool:
if isinstance(other, str):
other = LastModificationDate(other)
return self._last_modification_date < other._last_modification_date
def __le__(self, other: 'LastModificationDate') -> bool:
if isinstance(other, str):
other = LastModificationDate(other)
return self._last_modification_date <= other._last_modification_date
def __gt__(self, other: 'LastModificationDate') -> bool:
if isinstance(other, str):
other = LastModificationDate(other)
return self._last_modification_date > other._last_modification_date
def __ge__(self, other: 'LastModificationDate') -> bool:
if isinstance(other, str):
other = LastModificationDate(other)
return self._last_modification_date >= other._last_modification_date
def __ne__(self, other: 'LastModificationDate') -> bool:
if isinstance(other, str):
other = LastModificationDate(other)
return self._last_modification_date != other._last_modification_date
def __str__(self: 'LastModificationDate') -> Union[None, str]:
return self._last_modification_date
def toJsonObj(self):
return {
"@type": "xsd:dateTimeStamp",
"@value": self._last_modification_date
}
class WithId:
"""
Class helper to get json-ld "@id" thingies
"""
_tmp: str = None
def __init__(self, obj: Optional[dict[str, str]]):
if obj is None:
return
self._tmp = obj.get('@id')
def str(self) -> Optional[str]:
return self._tmp