/
OntologyResponderV2.scala
3283 lines (2750 loc) · 154 KB
/
OntologyResponderV2.scala
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/*
* Copyright © 2015-2021 the contributors (see Contributors.md).
*
* This file is part of Knora.
*
* Knora is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published
* by the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Knora is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU Affero General Public License for more details.
*
* You should have received a copy of the GNU Affero General Public
* License along with Knora. If not, see <http://www.gnu.org/licenses/>.
*/
package org.knora.webapi.responders.v2
import akka.http.scaladsl.util.FastFuture
import akka.pattern._
import org.knora.webapi.exceptions._
import org.knora.webapi.messages.IriConversions._
import org.knora.webapi.messages.admin.responder.projectsmessages.{
ProjectGetRequestADM,
ProjectGetResponseADM,
ProjectIdentifierADM
}
import org.knora.webapi.messages.admin.responder.usersmessages.UserADM
import org.knora.webapi.messages.store.triplestoremessages.{
SmartIriLiteralV2,
SparqlUpdateRequest,
SparqlUpdateResponse,
StringLiteralV2
}
import org.knora.webapi.messages.util.{ErrorHandlingMap, ResponderData}
import org.knora.webapi.messages.v2.responder.ontologymessages.Cardinality.KnoraCardinalityInfo
import org.knora.webapi.messages.v2.responder.ontologymessages._
import org.knora.webapi.messages.v2.responder.{CanDoResponseV2, SuccessResponseV2}
import org.knora.webapi.messages.{OntologyConstants, SmartIri}
import org.knora.webapi.responders.Responder.handleUnexpectedMessage
import org.knora.webapi.responders.v2.ontology.Cache.ONTOLOGY_CACHE_LOCK_IRI
import org.knora.webapi.responders.v2.ontology.{Cache, Cardinalities, OntologyHelpers}
import org.knora.webapi.responders.{IriLocker, Responder}
import org.knora.webapi.util._
import org.knora.webapi._
import java.time.Instant
import scala.concurrent.{ExecutionContext, Future}
/**
* Responds to requests dealing with ontologies.
*
* The API v2 ontology responder reads ontologies from two sources:
*
* - The triplestore.
* - The constant knora-api v2 ontologies that are defined in Scala rather than in the triplestore, [[KnoraBaseToApiV2SimpleTransformationRules]] and [[KnoraBaseToApiV2ComplexTransformationRules]].
*
* It maintains an in-memory cache of all ontology data. This cache can be refreshed by sending a [[LoadOntologiesRequestV2]].
*
* Read requests to the ontology responder may contain internal or external IRIs as needed. Response messages from the
* ontology responder will contain internal IRIs and definitions, unless a constant API v2 ontology was requested,
* in which case the response will be in the requested API v2 schema.
*
* In API v2, the ontology responder can also create and update ontologies. Update requests must contain
* [[ApiV2Complex]] IRIs and definitions.
*
* The API v1 ontology responder, which is read-only, delegates most of its work to this responder.
*/
class OntologyResponderV2(responderData: ResponderData) extends Responder(responderData) {
/**
* Receives a message of type [[OntologiesResponderRequestV2]], and returns an appropriate response message.
*/
def receive(msg: OntologiesResponderRequestV2) = msg match {
case LoadOntologiesRequestV2(featureFactoryConfig, requestingUser) =>
Cache.loadOntologies(settings, storeManager, featureFactoryConfig, requestingUser)
case EntityInfoGetRequestV2(classIris, propertyIris, requestingUser) =>
getEntityInfoResponseV2(classIris, propertyIris, requestingUser)
case StandoffEntityInfoGetRequestV2(standoffClassIris, standoffPropertyIris, requestingUser) =>
getStandoffEntityInfoResponseV2(standoffClassIris, standoffPropertyIris, requestingUser)
case StandoffClassesWithDataTypeGetRequestV2(requestingUser) =>
getStandoffStandoffClassesWithDataTypeV2(requestingUser)
case StandoffAllPropertyEntitiesGetRequestV2(requestingUser) => getAllStandoffPropertyEntitiesV2(requestingUser)
case CheckSubClassRequestV2(subClassIri, superClassIri, requestingUser) =>
checkSubClassV2(subClassIri, superClassIri)
case SubClassesGetRequestV2(resourceClassIri, requestingUser) => getSubClassesV2(resourceClassIri, requestingUser)
case OntologyKnoraEntityIrisGetRequestV2(namedGraphIri, requestingUser) =>
getKnoraEntityIrisInNamedGraphV2(namedGraphIri, requestingUser)
case OntologyEntitiesGetRequestV2(ontologyIri, allLanguages, requestingUser) =>
getOntologyEntitiesV2(ontologyIri, allLanguages, requestingUser)
case ClassesGetRequestV2(resourceClassIris, allLanguages, requestingUser) =>
getClassDefinitionsFromOntologyV2(resourceClassIris, allLanguages, requestingUser)
case PropertiesGetRequestV2(propertyIris, allLanguages, requestingUser) =>
getPropertyDefinitionsFromOntologyV2(propertyIris, allLanguages, requestingUser)
case OntologyMetadataGetByProjectRequestV2(projectIris, requestingUser) =>
getOntologyMetadataForProjectsV2(projectIris, requestingUser)
case OntologyMetadataGetByIriRequestV2(ontologyIris, requestingUser) =>
getOntologyMetadataByIriV2(ontologyIris, requestingUser)
case createOntologyRequest: CreateOntologyRequestV2 => createOntology(createOntologyRequest)
case changeOntologyMetadataRequest: ChangeOntologyMetadataRequestV2 =>
changeOntologyMetadata(changeOntologyMetadataRequest)
case deleteOntologyCommentRequest: DeleteOntologyCommentRequestV2 =>
deleteOntologyComment(deleteOntologyCommentRequest)
case createClassRequest: CreateClassRequestV2 => createClass(createClassRequest)
case changeClassLabelsOrCommentsRequest: ChangeClassLabelsOrCommentsRequestV2 =>
changeClassLabelsOrComments(changeClassLabelsOrCommentsRequest)
case addCardinalitiesToClassRequest: AddCardinalitiesToClassRequestV2 =>
addCardinalitiesToClass(addCardinalitiesToClassRequest)
case canChangeCardinalitiesRequest: CanChangeCardinalitiesRequestV2 =>
canChangeClassCardinalities(canChangeCardinalitiesRequest)
case changeCardinalitiesRequest: ChangeCardinalitiesRequestV2 =>
changeClassCardinalities(changeCardinalitiesRequest)
case canDeleteCardinalitiesFromClassRequestV2: CanDeleteCardinalitiesFromClassRequestV2 =>
canDeleteCardinalitiesFromClass(canDeleteCardinalitiesFromClassRequestV2)
case deleteCardinalitiesfromClassRequest: DeleteCardinalitiesFromClassRequestV2 =>
deleteCardinalitiesFromClass(deleteCardinalitiesfromClassRequest)
case changeGuiOrderRequest: ChangeGuiOrderRequestV2 => changeGuiOrder(changeGuiOrderRequest)
case canDeleteClassRequest: CanDeleteClassRequestV2 => canDeleteClass(canDeleteClassRequest)
case deleteClassRequest: DeleteClassRequestV2 => deleteClass(deleteClassRequest)
case createPropertyRequest: CreatePropertyRequestV2 => createProperty(createPropertyRequest)
case changePropertyLabelsOrCommentsRequest: ChangePropertyLabelsOrCommentsRequestV2 =>
changePropertyLabelsOrComments(changePropertyLabelsOrCommentsRequest)
case changePropertyGuiElementRequest: ChangePropertyGuiElementRequest =>
changePropertyGuiElement(changePropertyGuiElementRequest)
case canDeletePropertyRequest: CanDeletePropertyRequestV2 => canDeleteProperty(canDeletePropertyRequest)
case deletePropertyRequest: DeletePropertyRequestV2 => deleteProperty(deletePropertyRequest)
case canDeleteOntologyRequest: CanDeleteOntologyRequestV2 => canDeleteOntology(canDeleteOntologyRequest)
case deleteOntologyRequest: DeleteOntologyRequestV2 => deleteOntology(deleteOntologyRequest)
case other => handleUnexpectedMessage(other, log, this.getClass.getName)
}
/**
* Given a list of resource IRIs and a list of property IRIs (ontology entities), returns an [[EntityInfoGetResponseV2]] describing both resource and property entities.
*
* @param classIris the IRIs of the resource entities to be queried.
* @param propertyIris the IRIs of the property entities to be queried.
* @param requestingUser the user making the request.
* @return an [[EntityInfoGetResponseV2]].
*/
private def getEntityInfoResponseV2(
classIris: Set[SmartIri] = Set.empty[SmartIri],
propertyIris: Set[SmartIri] = Set.empty[SmartIri],
requestingUser: UserADM
): Future[EntityInfoGetResponseV2] =
OntologyHelpers.getEntityInfoResponseV2(classIris, propertyIris, requestingUser)
/**
* Given a list of standoff class IRIs and a list of property IRIs (ontology entities), returns an [[StandoffEntityInfoGetResponseV2]] describing both resource and property entities.
*
* @param standoffClassIris the IRIs of the resource entities to be queried.
* @param standoffPropertyIris the IRIs of the property entities to be queried.
* @param requestingUser the user making the request.
* @return a [[StandoffEntityInfoGetResponseV2]].
*/
private def getStandoffEntityInfoResponseV2(
standoffClassIris: Set[SmartIri] = Set.empty[SmartIri],
standoffPropertyIris: Set[SmartIri] = Set.empty[SmartIri],
requestingUser: UserADM
): Future[StandoffEntityInfoGetResponseV2] =
for {
cacheData <- Cache.getCacheData
entitiesInWrongSchema =
(standoffClassIris ++ standoffPropertyIris).filter(_.getOntologySchema.contains(ApiV2Simple))
_ = if (entitiesInWrongSchema.nonEmpty) {
throw NotFoundException(
s"Some requested standoff classes were not found: ${entitiesInWrongSchema.mkString(", ")}"
)
}
classIrisForCache = standoffClassIris.map(_.toOntologySchema(InternalSchema))
propertyIrisForCache = standoffPropertyIris.map(_.toOntologySchema(InternalSchema))
classOntologies: Iterable[ReadOntologyV2] = cacheData.ontologies.view
.filterKeys(classIrisForCache.map(_.getOntologyFromEntity))
.values
propertyOntologies: Iterable[ReadOntologyV2] = cacheData.ontologies.view
.filterKeys(propertyIrisForCache.map(_.getOntologyFromEntity))
.values
classDefsAvailable: Map[SmartIri, ReadClassInfoV2] = classOntologies.flatMap { ontology =>
ontology.classes.filter { case (classIri, classDef) =>
classDef.isStandoffClass && standoffClassIris.contains(
classIri
)
}
}.toMap
propertyDefsAvailable: Map[SmartIri, ReadPropertyInfoV2] = propertyOntologies.flatMap { ontology =>
ontology.properties.filter { case (propertyIri, _) =>
standoffPropertyIris.contains(
propertyIri
) && cacheData.standoffProperties.contains(
propertyIri
)
}
}.toMap
missingClassDefs = classIrisForCache -- classDefsAvailable.keySet
missingPropertyDefs = propertyIrisForCache -- propertyDefsAvailable.keySet
_ = if (missingClassDefs.nonEmpty) {
throw NotFoundException(
s"Some requested standoff classes were not found: ${missingClassDefs.mkString(", ")}"
)
}
_ = if (missingPropertyDefs.nonEmpty) {
throw NotFoundException(
s"Some requested standoff properties were not found: ${missingPropertyDefs.mkString(", ")}"
)
}
response = StandoffEntityInfoGetResponseV2(
standoffClassInfoMap =
new ErrorHandlingMap(classDefsAvailable, key => s"Resource class $key not found"),
standoffPropertyInfoMap =
new ErrorHandlingMap(propertyDefsAvailable, key => s"Property $key not found")
)
} yield response
/**
* Gets information about all standoff classes that are a subclass of a data type standoff class.
*
* @param requestingUser the user making the request.
* @return a [[StandoffClassesWithDataTypeGetResponseV2]]
*/
private def getStandoffStandoffClassesWithDataTypeV2(
requestingUser: UserADM
): Future[StandoffClassesWithDataTypeGetResponseV2] =
for {
cacheData <- Cache.getCacheData
} yield StandoffClassesWithDataTypeGetResponseV2(
standoffClassInfoMap = cacheData.ontologies.values.flatMap { ontology =>
ontology.classes.filter { case (_, classDef) =>
classDef.isStandoffClass && classDef.standoffDataType.isDefined
}
}.toMap
)
/**
* Gets all standoff property entities.
*
* @param requestingUser the user making the request.
* @return a [[StandoffAllPropertyEntitiesGetResponseV2]].
*/
private def getAllStandoffPropertyEntitiesV2(
requestingUser: UserADM
): Future[StandoffAllPropertyEntitiesGetResponseV2] =
for {
cacheData <- Cache.getCacheData
} yield StandoffAllPropertyEntitiesGetResponseV2(
standoffAllPropertiesEntityInfoMap = cacheData.ontologies.values.flatMap { ontology =>
ontology.properties.view.filterKeys(cacheData.standoffProperties)
}.toMap
)
/**
* Checks whether a certain Knora resource or value class is a subclass of another class.
*
* @param subClassIri the IRI of the resource or value class whose subclassOf relations have to be checked.
* @param superClassIri the IRI of the resource or value class to check for (whether it is a a super class of `subClassIri` or not).
* @return a [[CheckSubClassResponseV2]].
*/
private def checkSubClassV2(subClassIri: SmartIri, superClassIri: SmartIri): Future[CheckSubClassResponseV2] =
for {
cacheData <- Cache.getCacheData
response = CheckSubClassResponseV2(
isSubClass = cacheData.subClassOfRelations.get(subClassIri) match {
case Some(baseClasses) => baseClasses.contains(superClassIri)
case None => throw BadRequestException(s"Class $subClassIri not found")
}
)
} yield response
/**
* Gets the IRIs of the subclasses of a class.
*
* @param classIri the IRI of the class whose subclasses should be returned.
* @return a [[SubClassesGetResponseV2]].
*/
private def getSubClassesV2(classIri: SmartIri, requestingUser: UserADM): Future[SubClassesGetResponseV2] =
for {
cacheData <- Cache.getCacheData
subClassIris = cacheData.superClassOfRelations(classIri).toVector.sorted
subClasses = subClassIris.map { subClassIri =>
val classInfo: ReadClassInfoV2 =
cacheData.ontologies(subClassIri.getOntologyFromEntity).classes(subClassIri)
SubClassInfoV2(
id = subClassIri,
label = classInfo.entityInfoContent
.getPredicateStringLiteralObject(
predicateIri = OntologyConstants.Rdfs.Label.toSmartIri,
preferredLangs = Some(requestingUser.lang, settings.fallbackLanguage)
)
.getOrElse(
throw InconsistentRepositoryDataException(s"Resource class $subClassIri has no rdfs:label")
)
)
}
} yield SubClassesGetResponseV2(
subClasses = subClasses
)
/**
* Gets the [[OntologyKnoraEntitiesIriInfoV2]] for an ontology.
*
* @param ontologyIri the IRI of the ontology to query
* @param requestingUser the user making the request.
* @return an [[OntologyKnoraEntitiesIriInfoV2]].
*/
private def getKnoraEntityIrisInNamedGraphV2(
ontologyIri: SmartIri,
requestingUser: UserADM
): Future[OntologyKnoraEntitiesIriInfoV2] =
for {
cacheData <- Cache.getCacheData
ontology = cacheData.ontologies(ontologyIri)
} yield OntologyKnoraEntitiesIriInfoV2(
ontologyIri = ontologyIri,
propertyIris = ontology.properties.keySet.filter { propertyIri =>
OntologyHelpers.isKnoraResourceProperty(propertyIri, cacheData)
},
classIris = ontology.classes.filter { case (_, classDef) =>
classDef.isResourceClass
}.keySet,
standoffClassIris = ontology.classes.filter { case (_, classDef) =>
classDef.isStandoffClass
}.keySet,
standoffPropertyIris = ontology.properties.keySet.filter(cacheData.standoffProperties)
)
/**
* Gets the metadata describing the ontologies that belong to selected projects, or to all projects.
*
* @param projectIris the IRIs of the projects selected, or an empty set if all projects are selected.
* @param requestingUser the user making the request.
* @return a [[ReadOntologyMetadataV2]].
*/
private def getOntologyMetadataForProjectsV2(
projectIris: Set[SmartIri],
requestingUser: UserADM
): Future[ReadOntologyMetadataV2] =
for {
cacheData <- Cache.getCacheData
returnAllOntologies: Boolean = projectIris.isEmpty
ontologyMetadata: Set[OntologyMetadataV2] = if (returnAllOntologies) {
cacheData.ontologies.values.map(_.ontologyMetadata).toSet
} else {
cacheData.ontologies.values.filter { ontology =>
projectIris.contains(ontology.ontologyMetadata.projectIri.get)
}.map { ontology =>
ontology.ontologyMetadata
}.toSet
}
} yield ReadOntologyMetadataV2(
ontologies = ontologyMetadata
)
/**
* Gets the metadata describing the specified ontologies, or all ontologies.
*
* @param ontologyIris the IRIs of the ontologies selected, or an empty set if all ontologies are selected.
* @param requestingUser the user making the request.
* @return a [[ReadOntologyMetadataV2]].
*/
private def getOntologyMetadataByIriV2(
ontologyIris: Set[SmartIri],
requestingUser: UserADM
): Future[ReadOntologyMetadataV2] =
for {
cacheData <- Cache.getCacheData
returnAllOntologies: Boolean = ontologyIris.isEmpty
ontologyMetadata: Set[OntologyMetadataV2] = if (returnAllOntologies) {
cacheData.ontologies.values.map(_.ontologyMetadata).toSet
} else {
val ontologyIrisForCache =
ontologyIris.map(_.toOntologySchema(InternalSchema))
val missingOntologies =
ontologyIrisForCache -- cacheData.ontologies.keySet
if (missingOntologies.nonEmpty) {
throw BadRequestException(
s"One or more requested ontologies were not found: ${missingOntologies
.mkString(", ")}"
)
}
cacheData.ontologies.view
.filterKeys(ontologyIrisForCache)
.values
.map { ontology =>
ontology.ontologyMetadata
}
.toSet
}
} yield ReadOntologyMetadataV2(
ontologies = ontologyMetadata
)
/**
* Requests the entities defined in the given ontology.
*
* @param ontologyIri the IRI (internal or external) of the ontology to be queried.
* @param requestingUser the user making the request.
* @return a [[ReadOntologyV2]].
*/
private def getOntologyEntitiesV2(
ontologyIri: SmartIri,
allLanguages: Boolean,
requestingUser: UserADM
): Future[ReadOntologyV2] =
for {
cacheData <- Cache.getCacheData
_ = if (ontologyIri.getOntologyName == "standoff" && ontologyIri.getOntologySchema.contains(ApiV2Simple)) {
throw BadRequestException(s"The standoff ontology is not available in the API v2 simple schema")
}
ontology = cacheData.ontologies.get(ontologyIri.toOntologySchema(InternalSchema)) match {
case Some(cachedOntology) => cachedOntology
case None => throw NotFoundException(s"Ontology not found: $ontologyIri")
}
// Are we returning data in the user's preferred language, or in all available languages?
userLang = if (!allLanguages) {
// Just the user's preferred language.
Some(requestingUser.lang)
} else {
// All available languages.
None
}
} yield ontology.copy(
userLang = userLang
)
/**
* Requests information about OWL classes in a single ontology.
*
* @param classIris the IRIs (internal or external) of the classes to query for.
* @param requestingUser the user making the request.
* @return a [[ReadOntologyV2]].
*/
private def getClassDefinitionsFromOntologyV2(
classIris: Set[SmartIri],
allLanguages: Boolean,
requestingUser: UserADM
): Future[ReadOntologyV2] =
OntologyHelpers.getClassDefinitionsFromOntologyV2(classIris, allLanguages, requestingUser)
/**
* Requests information about properties in a single ontology.
*
* @param propertyIris the IRIs (internal or external) of the properties to query for.
* @param requestingUser the user making the request.
* @return a [[ReadOntologyV2]].
*/
private def getPropertyDefinitionsFromOntologyV2(
propertyIris: Set[SmartIri],
allLanguages: Boolean,
requestingUser: UserADM
): Future[ReadOntologyV2] =
for {
cacheData <- Cache.getCacheData
ontologyIris = propertyIris.map(_.getOntologyFromEntity)
_ = if (ontologyIris.size != 1) {
throw BadRequestException(s"Only one ontology may be queried per request")
}
propertyInfoResponse: EntityInfoGetResponseV2 <-
getEntityInfoResponseV2(propertyIris = propertyIris, requestingUser = requestingUser)
internalOntologyIri = ontologyIris.head.toOntologySchema(InternalSchema)
// Are we returning data in the user's preferred language, or in all available languages?
userLang = if (!allLanguages) {
// Just the user's preferred language.
Some(requestingUser.lang)
} else {
// All available languages.
None
}
} yield ReadOntologyV2(
ontologyMetadata = cacheData.ontologies(internalOntologyIri).ontologyMetadata,
properties = propertyInfoResponse.propertyInfoMap,
userLang = userLang
)
/**
* Creates a new, empty ontology.
*
* @param createOntologyRequest the request message.
* @return a [[SuccessResponseV2]].
*/
private def createOntology(createOntologyRequest: CreateOntologyRequestV2): Future[ReadOntologyMetadataV2] = {
def makeTaskFuture(internalOntologyIri: SmartIri): Future[ReadOntologyMetadataV2] =
for {
cacheData <- Cache.getCacheData
// Make sure the ontology doesn't already exist.
existingOntologyMetadata: Option[OntologyMetadataV2] <- OntologyHelpers.loadOntologyMetadata(
settings,
storeManager,
internalOntologyIri = internalOntologyIri,
featureFactoryConfig =
createOntologyRequest.featureFactoryConfig
)
_ = if (existingOntologyMetadata.nonEmpty) {
throw BadRequestException(
s"Ontology ${internalOntologyIri.toOntologySchema(ApiV2Complex)} cannot be created, because it already exists"
)
}
// If this is a shared ontology, make sure it's in the default shared ontologies project.
_ =
if (
createOntologyRequest.isShared && createOntologyRequest.projectIri.toString != OntologyConstants.KnoraAdmin.DefaultSharedOntologiesProject
) {
throw BadRequestException(
s"Shared ontologies must be created in project <${OntologyConstants.KnoraAdmin.DefaultSharedOntologiesProject}>"
)
}
// If it's in the default shared ontologies project, make sure it's a shared ontology.
_ =
if (
createOntologyRequest.projectIri.toString == OntologyConstants.KnoraAdmin.DefaultSharedOntologiesProject && !createOntologyRequest.isShared
) {
throw BadRequestException(
s"Ontologies created in project <${OntologyConstants.KnoraAdmin.DefaultSharedOntologiesProject}> must be shared"
)
}
// Create the ontology.
currentTime: Instant = Instant.now
createOntologySparql = org.knora.webapi.messages.twirl.queries.sparql.v2.txt
.createOntology(
triplestore = settings.triplestoreType,
ontologyNamedGraphIri = internalOntologyIri,
ontologyIri = internalOntologyIri,
projectIri = createOntologyRequest.projectIri,
isShared = createOntologyRequest.isShared,
ontologyLabel = createOntologyRequest.label,
ontologyComment = createOntologyRequest.comment,
currentTime = currentTime
)
.toString
_ <- (storeManager ? SparqlUpdateRequest(createOntologySparql)).mapTo[SparqlUpdateResponse]
// Check that the update was successful. To do this, we have to undo the SPARQL-escaping of the input.
unescapedNewMetadata = OntologyMetadataV2(
ontologyIri = internalOntologyIri,
projectIri = Some(createOntologyRequest.projectIri),
label = Some(createOntologyRequest.label),
comment = createOntologyRequest.comment,
lastModificationDate = Some(currentTime)
).unescape
maybeLoadedOntologyMetadata: Option[OntologyMetadataV2] <- OntologyHelpers.loadOntologyMetadata(
settings,
storeManager,
internalOntologyIri = internalOntologyIri,
featureFactoryConfig =
createOntologyRequest.featureFactoryConfig
)
_ = maybeLoadedOntologyMetadata match {
case Some(loadedOntologyMetadata) =>
if (loadedOntologyMetadata != unescapedNewMetadata) {
throw UpdateNotPerformedException()
}
case None => throw UpdateNotPerformedException()
}
// Update the ontology cache with the unescaped metadata.
_ =
Cache.storeCacheData(
cacheData.copy(
ontologies =
cacheData.ontologies + (internalOntologyIri -> ReadOntologyV2(ontologyMetadata = unescapedNewMetadata))
)
)
} yield ReadOntologyMetadataV2(ontologies = Set(unescapedNewMetadata))
for {
requestingUser <- FastFuture.successful(createOntologyRequest.requestingUser)
projectIri = createOntologyRequest.projectIri
// check if the requesting user is allowed to create an ontology
_ =
if (
!(requestingUser.permissions.isProjectAdmin(projectIri.toString) || requestingUser.permissions.isSystemAdmin)
) {
// println(s"requestingUser: $requestingUser")
// println(s"requestingUser.permissionData.isProjectAdmin(<${projectIri.toString}>): ${requestingUser.permissionData.isProjectAdmin(projectIri.toString)}")
throw ForbiddenException(
s"A new ontology in the project ${createOntologyRequest.projectIri} can only be created by an admin of that project, or by a system admin."
)
}
// Get project info for the shortcode.
projectInfo: ProjectGetResponseADM <- (responderManager ? ProjectGetRequestADM(
identifier = ProjectIdentifierADM(maybeIri = Some(projectIri.toString)),
featureFactoryConfig = createOntologyRequest.featureFactoryConfig,
requestingUser = requestingUser
)).mapTo[ProjectGetResponseADM]
// Check that the ontology name is valid.
validOntologyName =
stringFormatter.validateProjectSpecificOntologyName(
createOntologyRequest.ontologyName,
throw BadRequestException(s"Invalid project-specific ontology name: ${createOntologyRequest.ontologyName}")
)
// Make the internal ontology IRI.
internalOntologyIri = stringFormatter.makeProjectSpecificInternalOntologyIri(
validOntologyName,
createOntologyRequest.isShared,
projectInfo.project.shortcode
)
// Do the remaining pre-update checks and the update while holding a global ontology cache lock.
taskResult <- IriLocker.runWithIriLock(
apiRequestID = createOntologyRequest.apiRequestID,
iri = ONTOLOGY_CACHE_LOCK_IRI,
task = () => makeTaskFuture(internalOntologyIri)
)
} yield taskResult
}
/**
* Changes ontology metadata.
*
* @param changeOntologyMetadataRequest the request to change the metadata.
* @return a [[ReadOntologyMetadataV2]] containing the new metadata.
*/
def changeOntologyMetadata(
changeOntologyMetadataRequest: ChangeOntologyMetadataRequestV2
): Future[ReadOntologyMetadataV2] = {
def makeTaskFuture(internalOntologyIri: SmartIri): Future[ReadOntologyMetadataV2] =
for {
cacheData <- Cache.getCacheData
// Check that the user has permission to update the ontology.
projectIri <- OntologyHelpers.checkPermissionsForOntologyUpdate(
internalOntologyIri = internalOntologyIri,
requestingUser = changeOntologyMetadataRequest.requestingUser
)
// Check that the ontology exists and has not been updated by another user since the client last read its metadata.
_ <- OntologyHelpers.checkOntologyLastModificationDateBeforeUpdate(
settings,
storeManager,
internalOntologyIri = internalOntologyIri,
expectedLastModificationDate = changeOntologyMetadataRequest.lastModificationDate,
featureFactoryConfig = changeOntologyMetadataRequest.featureFactoryConfig
)
// get the metadata of the ontology.
oldMetadata: OntologyMetadataV2 = cacheData.ontologies(internalOntologyIri).ontologyMetadata
// Was there a comment in the ontology metadata?
ontologyHasComment: Boolean = oldMetadata.comment.nonEmpty
// Update the metadata.
currentTime: Instant = Instant.now
updateSparql = org.knora.webapi.messages.twirl.queries.sparql.v2.txt
.changeOntologyMetadata(
triplestore = settings.triplestoreType,
ontologyNamedGraphIri = internalOntologyIri,
ontologyIri = internalOntologyIri,
newLabel = changeOntologyMetadataRequest.label,
hasOldComment = ontologyHasComment,
deleteOldComment = ontologyHasComment && changeOntologyMetadataRequest.comment.nonEmpty,
newComment = changeOntologyMetadataRequest.comment,
lastModificationDate = changeOntologyMetadataRequest.lastModificationDate,
currentTime = currentTime
)
.toString()
_ <- (storeManager ? SparqlUpdateRequest(updateSparql)).mapTo[SparqlUpdateResponse]
// Check that the update was successful. To do this, we have to undo the SPARQL-escaping of the input.
// Is there any new label given?
label = if (changeOntologyMetadataRequest.label.isEmpty) {
// No. Consider the old label for checking the update.
oldMetadata.label
} else {
// Yes. Consider the new label for checking the update.
changeOntologyMetadataRequest.label
}
// Is there any new comment given?
comment = if (changeOntologyMetadataRequest.comment.isEmpty) {
// No. Consider the old comment for checking the update.
oldMetadata.comment
} else {
// Yes. Consider the new comment for checking the update.
changeOntologyMetadataRequest.comment
}
unescapedNewMetadata = OntologyMetadataV2(
ontologyIri = internalOntologyIri,
projectIri = Some(projectIri),
label = label,
comment = comment,
lastModificationDate = Some(currentTime)
).unescape
maybeLoadedOntologyMetadata: Option[OntologyMetadataV2] <-
OntologyHelpers.loadOntologyMetadata(
settings,
storeManager,
internalOntologyIri = internalOntologyIri,
featureFactoryConfig = changeOntologyMetadataRequest.featureFactoryConfig
)
_ = maybeLoadedOntologyMetadata match {
case Some(loadedOntologyMetadata) =>
if (loadedOntologyMetadata != unescapedNewMetadata) {
throw UpdateNotPerformedException()
}
case None => throw UpdateNotPerformedException()
}
// Update the ontology cache with the unescaped metadata.
_ = Cache.storeCacheData(
cacheData.copy(
ontologies = cacheData.ontologies + (internalOntologyIri -> cacheData
.ontologies(internalOntologyIri)
.copy(ontologyMetadata = unescapedNewMetadata))
)
)
} yield ReadOntologyMetadataV2(ontologies = Set(unescapedNewMetadata))
for {
_ <- OntologyHelpers.checkExternalOntologyIriForUpdate(changeOntologyMetadataRequest.ontologyIri)
internalOntologyIri = changeOntologyMetadataRequest.ontologyIri.toOntologySchema(InternalSchema)
// Do the remaining pre-update checks and the update while holding a global ontology cache lock.
taskResult <- IriLocker.runWithIriLock(
apiRequestID = changeOntologyMetadataRequest.apiRequestID,
iri = ONTOLOGY_CACHE_LOCK_IRI,
task = () => makeTaskFuture(internalOntologyIri = internalOntologyIri)
)
} yield taskResult
}
def deleteOntologyComment(
deleteOntologyCommentRequestV2: DeleteOntologyCommentRequestV2
): Future[ReadOntologyMetadataV2] = {
def makeTaskFuture(internalOntologyIri: SmartIri): Future[ReadOntologyMetadataV2] =
for {
cacheData <- Cache.getCacheData
// Check that the user has permission to update the ontology.
projectIri <- OntologyHelpers.checkPermissionsForOntologyUpdate(
internalOntologyIri = internalOntologyIri,
requestingUser = deleteOntologyCommentRequestV2.requestingUser
)
// Check that the ontology exists and has not been updated by another user since the client last read its metadata.
_ <- OntologyHelpers.checkOntologyLastModificationDateBeforeUpdate(
settings,
storeManager,
internalOntologyIri = internalOntologyIri,
expectedLastModificationDate = deleteOntologyCommentRequestV2.lastModificationDate,
featureFactoryConfig = deleteOntologyCommentRequestV2.featureFactoryConfig
)
// get the metadata of the ontology.
oldMetadata: OntologyMetadataV2 = cacheData.ontologies(internalOntologyIri).ontologyMetadata
// Was there a comment in the ontology metadata?
ontologyHasComment: Boolean = oldMetadata.comment.nonEmpty
// Update the metadata.
currentTime: Instant = Instant.now
updateSparql = org.knora.webapi.messages.twirl.queries.sparql.v2.txt
.changeOntologyMetadata(
triplestore = settings.triplestoreType,
ontologyNamedGraphIri = internalOntologyIri,
ontologyIri = internalOntologyIri,
newLabel = None,
hasOldComment = ontologyHasComment,
deleteOldComment = true,
newComment = None,
lastModificationDate = deleteOntologyCommentRequestV2.lastModificationDate,
currentTime = currentTime
)
.toString()
_ <- (storeManager ? SparqlUpdateRequest(updateSparql)).mapTo[SparqlUpdateResponse]
// Check that the update was successful.
unescapedNewMetadata = OntologyMetadataV2(
ontologyIri = internalOntologyIri,
projectIri = Some(projectIri),
label = oldMetadata.label,
comment = None,
lastModificationDate = Some(currentTime)
).unescape
maybeLoadedOntologyMetadata: Option[OntologyMetadataV2] <-
OntologyHelpers.loadOntologyMetadata(
settings,
storeManager,
internalOntologyIri = internalOntologyIri,
featureFactoryConfig = deleteOntologyCommentRequestV2.featureFactoryConfig
)
_ = maybeLoadedOntologyMetadata match {
case Some(loadedOntologyMetadata) =>
if (loadedOntologyMetadata != unescapedNewMetadata) {
throw UpdateNotPerformedException()
}
case None => throw UpdateNotPerformedException()
}
// Update the ontology cache with the unescaped metadata.
_ = Cache.storeCacheData(
cacheData.copy(
ontologies = cacheData.ontologies + (internalOntologyIri -> cacheData
.ontologies(internalOntologyIri)
.copy(ontologyMetadata = unescapedNewMetadata))
)
)
} yield ReadOntologyMetadataV2(ontologies = Set(unescapedNewMetadata))
for {
_ <- OntologyHelpers.checkExternalOntologyIriForUpdate(deleteOntologyCommentRequestV2.ontologyIri)
internalOntologyIri = deleteOntologyCommentRequestV2.ontologyIri.toOntologySchema(InternalSchema)
// Do the remaining pre-update checks and the update while holding a global ontology cache lock.
taskResult <- IriLocker.runWithIriLock(
apiRequestID = deleteOntologyCommentRequestV2.apiRequestID,
iri = ONTOLOGY_CACHE_LOCK_IRI,
task = () => makeTaskFuture(internalOntologyIri = internalOntologyIri)
)
} yield taskResult
}
/**
* Creates a class in an existing ontology.
*
* @param createClassRequest the request to create the class.
* @return a [[ReadOntologyV2]] in the internal schema, the containing the definition of the new class.
*/
private def createClass(createClassRequest: CreateClassRequestV2): Future[ReadOntologyV2] = {
def makeTaskFuture(internalClassIri: SmartIri, internalOntologyIri: SmartIri): Future[ReadOntologyV2] = {
for {
cacheData <- Cache.getCacheData
internalClassDef: ClassInfoContentV2 = createClassRequest.classInfoContent.toOntologySchema(InternalSchema)
// Check that the ontology exists and has not been updated by another user since the client last read it.
_ <- OntologyHelpers.checkOntologyLastModificationDateBeforeUpdate(
settings,
storeManager,
internalOntologyIri = internalOntologyIri,
expectedLastModificationDate = createClassRequest.lastModificationDate,
featureFactoryConfig = createClassRequest.featureFactoryConfig
)
// Check that the class's rdf:type is owl:Class.
rdfType: SmartIri = internalClassDef.requireIriObject(
OntologyConstants.Rdf.Type.toSmartIri,
throw BadRequestException(s"No rdf:type specified")
)
_ = if (rdfType != OntologyConstants.Owl.Class.toSmartIri) {
throw BadRequestException(s"Invalid rdf:type for property: $rdfType")
}
ontology = cacheData.ontologies(internalOntologyIri)
// Check that the class doesn't exist yet.
_ = if (ontology.classes.contains(internalClassIri)) {
throw BadRequestException(s"Class ${createClassRequest.classInfoContent.classIri} already exists")
}
// Check that the class's IRI isn't already used for something else.
_ = if (ontology.properties.contains(internalClassIri) || ontology.individuals.contains(internalClassIri)) {
throw BadRequestException(s"IRI ${createClassRequest.classInfoContent.classIri} is already used")
}
// Check that the base classes that have Knora IRIs are defined as Knora resource classes.
missingBaseClasses =
internalClassDef.subClassOf
.filter(_.isKnoraInternalEntityIri)
.filter(baseClassIri => !OntologyHelpers.isKnoraInternalResourceClass(baseClassIri, cacheData))
_ = if (missingBaseClasses.nonEmpty) {
throw BadRequestException(
s"One or more specified base classes are invalid: ${missingBaseClasses.mkString(", ")}"
)
}
// Check for rdfs:subClassOf cycles.
allBaseClassIrisWithoutSelf: Set[SmartIri] = internalClassDef.subClassOf.flatMap { baseClassIri =>
cacheData.subClassOfRelations
.getOrElse(baseClassIri, Set.empty[SmartIri])
.toSet
}
_ = if (allBaseClassIrisWithoutSelf.contains(internalClassIri)) {
throw BadRequestException(
s"Class ${createClassRequest.classInfoContent.classIri} would have a cyclical rdfs:subClassOf"
)
}
// Check that the class is a subclass of knora-base:Resource.
allBaseClassIris: Seq[SmartIri] = internalClassIri +: allBaseClassIrisWithoutSelf.toSeq
_ = if (!allBaseClassIris.contains(OntologyConstants.KnoraBase.Resource.toSmartIri)) {
throw BadRequestException(
s"Class ${createClassRequest.classInfoContent.classIri} would not be a subclass of knora-api:Resource"
)
}
// Check that the cardinalities are valid, and add any inherited cardinalities.
(internalClassDefWithLinkValueProps, cardinalitiesForClassWithInheritance) =
OntologyHelpers
.checkCardinalitiesBeforeAdding(
internalClassDef = internalClassDef,
allBaseClassIris = allBaseClassIris.toSet,
cacheData = cacheData
)
// Check that the class definition doesn't refer to any non-shared ontologies in other projects.
_ = Cache.checkOntologyReferencesInClassDef(
ontologyCacheData = cacheData,
classDef = internalClassDefWithLinkValueProps,
errorFun = { msg: String =>
throw BadRequestException(msg)
}
)
// Prepare to update the ontology cache, undoing the SPARQL-escaping of the input.
propertyIrisOfAllCardinalitiesForClass = cardinalitiesForClassWithInheritance.keySet
inheritedCardinalities: Map[SmartIri, KnoraCardinalityInfo] =
cardinalitiesForClassWithInheritance.filterNot { case (propertyIri, _) =>
internalClassDefWithLinkValueProps.directCardinalities.contains(propertyIri)
}
unescapedClassDefWithLinkValueProps = internalClassDefWithLinkValueProps.unescape
readClassInfo = ReadClassInfoV2(
entityInfoContent = unescapedClassDefWithLinkValueProps,
allBaseClasses = allBaseClassIris,
isResourceClass = true,
canBeInstantiated = true,
inheritedCardinalities = inheritedCardinalities,
knoraResourceProperties = propertyIrisOfAllCardinalitiesForClass.filter(propertyIri =>
OntologyHelpers.isKnoraResourceProperty(propertyIri, cacheData)
),
linkProperties = propertyIrisOfAllCardinalitiesForClass.filter(propertyIri =>
OntologyHelpers.isLinkProp(propertyIri, cacheData)
),
linkValueProperties = propertyIrisOfAllCardinalitiesForClass.filter(propertyIri =>
OntologyHelpers.isLinkValueProp(propertyIri, cacheData)
),
fileValueProperties = propertyIrisOfAllCardinalitiesForClass.filter(propertyIri =>
OntologyHelpers.isFileValueProp(propertyIri, cacheData)
)
)