- Fixed: Correct command response error data formatting
- Added: Python 3.11 and 3.12 support
- Added:
overwrite
keyword argument for file upload functions for extra confirmation when uploading project files to a path that already exist (raises error if not specified) - Added: Smaller and faster compressed dataset format when saving with
CSDAT_FORMAT
(datasets saved in this format prior to this release may no longer be readable) - Updated: Calls to CryoSPARC’s command servers automatically retry while CryoSPARC is down for up to one minute
- Updated: Raise
cryosparc.errors.CommandError
instead ofAssertionError
when a CryoSPARC command server request fails - Updated: Raise
cryosparc.errors.DatasetLoadError
to show target file path whenDataset.load
encounters an exception - Updated: Improved server- and slot- related error messages
- Updated: Warn when connecting to CryoSPARC version that doesn’t match cryosparc-tools version
- Docs: Delete Rejected Exposures example
- Docs: Instructions for plotting scale bars on 2D Classes
- Docs: Revert downsampled, symmetry expanded particles example
- Docs: Connect a volume series to Class3D example
- Fixed:
Job.queue
methodlane
argument is now optional when queuing directly to master - Fixed: Dataset memory leak due to missing reference count decrease during dataset garbage collection
- Docs: pip update instructions
- Docs: Recommend Python environment as a prerequisite
- Added: Updated project doc spec with updated generate intermediate results settings field
- Fixed: Allow project file retrieval from when project directory contains a symbolic link
- Fixed: Auto-exclude slots with missing metafile and better error message when output metafile is missing
- Fixed: Extend
CommandClient.Error
fromException
- Fixed: Correctly catch command request timeout
- Docs: Added T20S workflow example
- Support for CryoSPARC v4.2
- Fix error when creating a job with
CryoSPARC.create_job
- Fix Dataset allocation error due to slot generation overflow
- Docs minor fixes
- Preliminary access to CryoSPARC Live via CryoSPARC.rtp command client
- Documenation fixes
- Use correct numpy object type for newer versions of Numpy
- Fix limit on number of active datasets
- Use correct C types in Cython header definition
- Initial release
- Manage CryoSPARC Projects, Workspaces and Jobs from Python
- Load input and output datasets
- Read and write MRC files
- Read and write STAR files