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Traceback (most recent call last):
File "/usr/local/lib/R/site-library/crisprScore/python/crisprai/getWeissmanScores.py", line 7, in <module>
from sgRNA_learning import *
File "/usr/local/lib/R/site-library/crisprScore/python/crisprai/sgRNA_learning.py", line 8, in <module>
import pandas as pd
File "/home/rstudio/.cache/R/basilisk/1.15.3/crisprScore/1.7.2/crisprai_basilisk/lib/python2.7/site-packages/pandas/__init__.py", line 7, in <module>
from . import hashtable, tslib, lib
File "pandas/tslib.pyx", line 2839, in init pandas.tslib (pandas/tslib.c:80041)
File "pandas/algos.pyx", line 64, in init pandas.algos (pandas/algos.c:180213)
ImportError: /home/rstudio/.cache/R/basilisk/1.15.3/crisprScore/1.7.2/crisprai_basilisk/lib/python2.7/site-packages/pandas/lib.so: undefined symbol: is_float_object
Error in file(file, "rt") : cannot open the connection
In addition: Warning message:
In file(file, "rt") :
cannot open file '/tmp/RtmpzFOk0q/scores.txt': No such file or directory
I am trying to run getCrispraiScores using the vignette example, but run into the following error.
Docker install:
R:
R output:
sessionInfo
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