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Support guide efficiency prediction for DjCas13d [feature request] #31

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abearab opened this issue Feb 1, 2024 · 1 comment

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crisprScore enhancement

abearab commented Feb 1, 2024

It would be nice if crisprVerse can support DjCas13d!

Wei, J., Lotfy, P., Faizi, K., Baungaard, S., Gibson, E., Wang, E., Slabodkin, H., Kinnaman, E., Chandrasekaran, S., Kitano, H., Durrant, M. G., Duffy, C. V., Pawluk, A., Hsu, P. D., & Konermann, S. (2023). Deep learning and CRISPR-Cas13d ortholog discovery for optimized RNA targeting. Cell systems, 14(12), 1087–1102.e13. https://doi.org/10.1016/j.cels.2023.11.006

also see https://github.com/ArcInstitute/RNAtargeting_web_custom

cc @nick-youngblut, @jingyi7777

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Jfortin1 commented Feb 2, 2024

@abearab @jingyi7777 @nick-youngblut That shouldn't be too hard -- which version of Python was used to run the code?

Jfortin1 self-assigned this

Jfortin1 added enhancement crisprScore labels

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DjCas13d prediction crisprVerse/crisprScore#14

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