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FedeGueli
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JN.1.11.1 acquired S:T572I (15) first and then S:R346T (3) > TRIO
JN.1.11.1 acquired S:T572I (25) first and then S:R346T (3) > TRIO
May 8, 2024
Formerly tracked as Branch 63 of sars-cov-2-variants/lineage-proposals#1097
and for FLiRT>Trio branch as Branch 111 of sars-cov-2-variants/lineage-proposals#1089
JN.1.11.1 >S:T572I (C23277T)
Query:C7113T,C23277T,T3565C, G24872T,-G9010A,-C6070T,-A24819G,T22928C
Samples: 15
EPI_ISL_18989868, EPI_ISL_19012494, EPI_ISL_19022916,
EPI_ISL_19028021, EPI_ISL_19032236, EPI_ISL_19032824,
EPI_ISL_19038709, EPI_ISL_19055484, EPI_ISL_19055680,
EPI_ISL_19058372, EPI_ISL_19070036, EPI_ISL_19070190,
EPI_ISL_19070263, EPI_ISL_19073920, EPI_ISL_19076771
Now with a FLiRT > TRIO Branch:
JN.1.11.1 >S:T572I (C23277T) > C3811T > C2197T, C9857T, S:R346T (G22599C) ,A23080G (S:Q506Q)
Query:C3811T , C2197T, C9857T,T3565C
Samples: 3 (US)
Tree:
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_150f8_c372a0.json?label=id:node_6971654
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