Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

JN.1.11.1 acquired S:T572I (25) first and then S:R346T (3) > TRIO #2568

Open
FedeGueli opened this issue Apr 27, 2024 · 0 comments
Open

JN.1.11.1 acquired S:T572I (25) first and then S:R346T (3) > TRIO #2568

FedeGueli opened this issue Apr 27, 2024 · 0 comments

Comments

@FedeGueli
Copy link
Contributor

Formerly tracked as Branch 63 of sars-cov-2-variants/lineage-proposals#1097
and for FLiRT>Trio branch as Branch 111 of sars-cov-2-variants/lineage-proposals#1089

JN.1.11.1 >S:T572I (C23277T)
Query:C7113T,C23277T,T3565C, G24872T,-G9010A,-C6070T,-A24819G,T22928C
Samples: 15
EPI_ISL_18989868, EPI_ISL_19012494, EPI_ISL_19022916,
EPI_ISL_19028021, EPI_ISL_19032236, EPI_ISL_19032824,
EPI_ISL_19038709, EPI_ISL_19055484, EPI_ISL_19055680,
EPI_ISL_19058372, EPI_ISL_19070036, EPI_ISL_19070190,
EPI_ISL_19070263, EPI_ISL_19073920, EPI_ISL_19076771

Now with a FLiRT > TRIO Branch:
JN.1.11.1 >S:T572I (C23277T) > C3811T > C2197T, C9857T, S:R346T (G22599C) ,A23080G (S:Q506Q)
Query:C3811T , C2197T, C9857T,T3565C
Samples: 3 (US)

Tree:
Screenshot 2024-04-27 alle 23 36 08
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_150f8_c372a0.json?label=id:node_6971654

@FedeGueli FedeGueli changed the title JN.1.11.1 acquired S:T572I (15) first and then S:R346T (3) > TRIO JN.1.11.1 acquired S:T572I (25) first and then S:R346T (3) > TRIO May 8, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant