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I was monitoring since a while this lineage in Branch 45 of sars-cov-2-variants/lineage-proposals#1097
I was dubious that it could really have an advantage but instead since i m tracking it isgrowing faster than any other S:T572I lineage hence i propose it here even if it has been sampled only in UK
Defining mutations:
JN.1.4>> T18453C > N:A35T( G28376A) > C23929T > C6781T, S:K150R (A22011G), S:T572I (C23277T)
Query: C23929T, C6781T,A22011G or C6781T,A22011G
Samples:37
Country: England
IDs:
EPI_ISL_18932525, EPI_ISL_18932537, EPI_ISL_18936366,
EPI_ISL_18936422, EPI_ISL_18950960, EPI_ISL_18950967,
EPI_ISL_18951034-18951037, EPI_ISL_18969249, EPI_ISL_18969497,
EPI_ISL_18969522, EPI_ISL_18969529, EPI_ISL_18969536-18969537,
EPI_ISL_18983476, EPI_ISL_18983479, EPI_ISL_18987621-18987622,
EPI_ISL_18987627, EPI_ISL_18987632-18987633, EPI_ISL_18987640,
EPI_ISL_18987645, EPI_ISL_18993567, EPI_ISL_18993571,
EPI_ISL_19006549, EPI_ISL_19006551-19006553, EPI_ISL_19006559,
EPI_ISL_19006562, EPI_ISL_19006567, EPI_ISL_19006652-19006653,
EPI_ISL_19006667
The text was updated successfully, but these errors were encountered:
FedeGueli
changed the title
JN.1.4 with N:A35I, S:K150R and S:T572I growing fast in England (37)
JN.1.4 with N:A35T, S:K150R and S:T572I growing fast in England (37)
Mar 28, 2024
FedeGueli
changed the title
JN.1.4 with N:A35T, S:K150R and S:T572I growing fast in England (37)
JN.1.4 with N:A35T, S:K150R and S:T572I growing fast in England (38)
Apr 5, 2024
FedeGueli
changed the title
JN.1.4 with N:A35T, S:K150R and S:T572I growing fast in England (38)
JN.1.4 with N:A35T, S:K150R and S:T572I growing fast in England (51 as of Apr 17)
Apr 17, 2024
likely just clusters but still not slow in England
FedeGueli
changed the title
JN.1.4 with N:A35T, S:K150R and S:T572I growing fast in England (51 as of Apr 17)
JN.1.4 with N:A35T, S:K150R and S:T572I growing in England (51 as of Apr 17)
Apr 17, 2024
FedeGueli
changed the title
JN.1.4 with N:A35T, S:K150R and S:T572I growing in England (51 as of Apr 17)
JN.1.4 with N:A35T, S:K150R and S:T572I growing in England (60 as of May 8)
May 8, 2024
I was monitoring since a while this lineage in Branch 45 of sars-cov-2-variants/lineage-proposals#1097
I was dubious that it could really have an advantage but instead since i m tracking it isgrowing faster than any other S:T572I lineage hence i propose it here even if it has been sampled only in UK
Defining mutations:
JN.1.4>> T18453C > N:A35T( G28376A) > C23929T > C6781T, S:K150R (A22011G), S:T572I (C23277T)
Query: C23929T, C6781T,A22011G or C6781T,A22011G
Samples:37
Country: England
IDs:
EPI_ISL_18932525, EPI_ISL_18932537, EPI_ISL_18936366,
EPI_ISL_18936422, EPI_ISL_18950960, EPI_ISL_18950967,
EPI_ISL_18951034-18951037, EPI_ISL_18969249, EPI_ISL_18969497,
EPI_ISL_18969522, EPI_ISL_18969529, EPI_ISL_18969536-18969537,
EPI_ISL_18983476, EPI_ISL_18983479, EPI_ISL_18987621-18987622,
EPI_ISL_18987627, EPI_ISL_18987632-18987633, EPI_ISL_18987640,
EPI_ISL_18987645, EPI_ISL_18993567, EPI_ISL_18993571,
EPI_ISL_19006549, EPI_ISL_19006551-19006553, EPI_ISL_19006559,
EPI_ISL_19006562, EPI_ISL_19006567, EPI_ISL_19006652-19006653,
EPI_ISL_19006667
Tree:
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_22975_554610.json?label=id:node_7028751
Growth advantage in England:
The text was updated successfully, but these errors were encountered: