build-test.yml

name: beamspy

on: [push, pull_request]

jobs:
  build:
    runs-on: ${{ matrix.os }}

    strategy:
      matrix:
        os: [ubuntu-latest, windows-latest, macos-latest]
        python-version: [3.7, 3.8]

    env:
      OS: ${{ matrix.os }}
      PYTHON: ${{ matrix.python-version }}

    steps:
      - uses: actions/checkout@v2

      - name: Setup conda - Python ${{ matrix.python-version }}
        uses: s-weigand/setup-conda@v1
        with:
          update-conda: true
          python-version: ${{ matrix.python-version }}
          conda-channels: conda-forge, bioconda

      - name: Install dependencies
        run: |

          python --version
          conda env update --file environment.yml --name __setup_conda

      - name: Lint with flake8
        run: |

          conda install flake8

          # stop build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics

          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

      - name: Test with pytest-cov
        run: |

          python setup.py install
          beamspy --help

          conda install pytest codecov pytest-cov -c conda-forge
          pytest --cov ./ --cov-config=.coveragerc --cov-report=xml

      - name: Upload code coverage to codecov
        uses: codecov/codecov-action@v1
        with:
          flags: unittests
          env_vars: OS,PYTHON
          fail_ci_if_error: true
          verbose: true