Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

old containers neeed updating #154

Open
16 tasks
mr-c opened this issue Apr 17, 2024 · 1 comment
Open
16 tasks

old containers neeed updating #154

mr-c opened this issue Apr 17, 2024 · 1 comment

Comments

@mr-c
Copy link
Member

mr-c commented Apr 17, 2024 •
edited

[DEPRECATION NOTICE] Docker Image Format v1 and Docker Image manifest version 2, schema 1 support is disabled by default and will be removed in an upcoming release. Suggest the author of quay.io/biocontainers/subread:1.5.0p3--0 to upgrade the image to the OCI Format or Docker Image manifest v2, schema 2. More information at https://docs.docker.com/go/deprecated-image-specs/

  • quay.io/biocontainers/bowtie2:2.3.0--py36_1
  • quay.io/biocontainers/bwa:0.7.17--ha92aebf_3
  • quay.io/biocontainers/crossmap:0.2.7--py27_0
  • quay.io/biocontainers/fastp:0.20.0--hdbcaa40_0
  • quay.io/biocontainers/gatk4:4.1.1.0--0
  • quay.io/biocontainers/gatk4:4.1.3.0--0
  • quay.io/biocontainers/kallisto:0.45.0--hdcc98e5_0
  • quay.io/biocontainers/kraken2:2.0.8_beta--pl526h6bb024c_0
  • quay.io/biocontainers/mashmap:2.0--gsl2.2_1
  • quay.io/biocontainers/minimap2:2.17--h8b12597_1
  • quay.io/biocontainers/multiqc:1.7--py_4
  • quay.io/biocontainers/phantompeakqualtools:1.2--1
  • quay.io/biocontainers/pizzly:0.37.3--0
  • quay.io/biocontainers/seqkit:0.7.1--0
  • quay.io/biocontainers/snp-sites:2.5.1--hed695b0_0
  • quay.io/biocontainers/spades:3.13.0--0
@mr-c mr-c mentioned this issue Apr 17, 2024
Merged
@mr-c
Copy link
Member Author

mr-c commented Apr 20, 2024

My dumb testing method: for container in $(git grep dockerPull | awk '{print $3}' | sort -u ); do echo ${container}; docker pull ${container}; done

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@mr-c