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More custom data types #938

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stevekm opened this issue Mar 3, 2022 · 1 comment
Open

More custom data types #938

stevekm opened this issue Mar 3, 2022 · 1 comment

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@stevekm
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stevekm commented Mar 3, 2022

As described here;

https://www.commonwl.org/v1.0/CommandLineTool.html#SchemaDefRequirement

https://www.commonwl.org/user_guide/19-custom-types/index.html

Right now only record and enum classes are able to be used as custom data types.

Would be great if this could be expanded to other types. For example, a File type such as this schema we frequently use for a reference genome fasta file

- name: RefFasta
  doc: reference genome .fasta file
  type: File
  secondaryFiles:
    - .amb
    - .ann
    - .bwt
    - .pac
    - .sa
    - .fai
    - ^.dict

@cwl-bot
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cwl-bot commented Mar 3, 2022

This issue has been mentioned on Common Workflow Language Discourse. There might be relevant details there:

https://cwl.discourse.group/t/unable-to-create-a-custom-file-type/569/3

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