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Gather implementation guidance #931

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mr-c opened this issue Oct 8, 2021 · 0 comments

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mr-c commented Oct 8, 2021

Documenting topics not within the scope of the CWL standards, but that do need to be addressed by implementors

For example, how to deal with user/group-IDs inside/outside containers and between steps:
For Kubernetes: https://github.com/Duke-GCB/calrissian/pull/120/files
Podman: https://github.com/common-workflow-language/cwltool/blob/aec33fcfa3459a90cbba8c88ebb991be94d21429/cwltool/docker.py#L343
--userns=keep-id

Docker:
https://github.com/common-workflow-language/cwltool/blob/aec33fcfa3459a90cbba8c88ebb991be94d21429/cwltool/docker.py#L393
--user=uid:gid of the running external user

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