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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
<modelVersion>4.0.0</modelVersion>
<!-- Project Description -->
<groupId>org.colomoto</groupId>
<artifactId>bioLQM</artifactId>
<name>Logical Qualitative Models of biological network</name>
<version>0.8-SNAPSHOT</version>
<description>simple toolbox for the manipulation of logical models (not edition)</description>
<inceptionYear>2012</inceptionYear>
<packaging>jar</packaging>
<url>https://github.com/colomoto/bioLQM</url>
<licenses>
<license>
<name>GNU Lesser General Public License Version 3 (LGPL v3+)</name>
<url>https://www.gnu.org/licenses/lgpl-3.0.html</url>
</license>
</licenses>
<developers>
<developer>
<name>Aurélien Naldi</name>
<email>aurelien.naldi@gmail.com</email>
</developer>
</developers>
<scm>
<connection>scm:git:git://github.com/colomoto/bioLQM.git</connection>
<developerConnection>scm:git:ssh://github.com:colomoto/bioLQM.git</developerConnection>
<url>http://github.com/colomoto/bioLQM</url>
</scm>
<properties>
<project.java.version>11</project.java.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
</properties>
<dependencies>
<dependency>
<groupId>org.junit.jupiter</groupId>
<artifactId>junit-jupiter-api</artifactId>
<version>5.9.3</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.junit.vintage</groupId>
<artifactId>junit-vintage-engine</artifactId>
<version>5.9.3</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.kohsuke.metainf-services</groupId>
<artifactId>metainf-services</artifactId>
<version>1.11</version>
<!-- only needed to compile: this allows to exclude it from copy-dependencies goal -->
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.colomoto</groupId>
<artifactId>MDDlib</artifactId>
<version>0.4.1</version>
</dependency>
<dependency>
<groupId>org.sbml.jsbml</groupId>
<artifactId>jsbml</artifactId>
<version>1.6.1</version>
</dependency>
<dependency>
<groupId>org.antlr</groupId>
<artifactId>antlr4-runtime</artifactId>
<version>4.13.0</version>
</dependency>
<dependency>
<groupId>de.fosd.typechef</groupId>
<artifactId>javabdd_repackaged</artifactId>
<version>1.0b2</version>
</dependency>
<dependency>
<groupId>org.ow2.sat4j</groupId>
<artifactId>org.ow2.sat4j.core</artifactId>
<version>2.3.6</version>
</dependency>
<dependency>
<groupId>org.yaml</groupId>
<artifactId>snakeyaml</artifactId>
<version>2.0</version>
</dependency>
<dependency>
<groupId>org.json</groupId>
<artifactId>json</artifactId>
<version>20230618</version>
</dependency>
<dependency>
<groupId>net.sf.saxon</groupId>
<artifactId>Saxon-HE</artifactId>
<version>12.2</version>
</dependency>
<dependency>
<groupId>com.github.rjeschke</groupId>
<artifactId>txtmark</artifactId>
<version>0.13</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<artifactId>maven-assembly-plugin</artifactId>
<configuration>
<archive>
<manifest>
<mainClass>org.colomoto.biolqm.LQMLauncher</mainClass>
</manifest>
</archive>
<descriptorRefs>
<descriptorRef>jar-with-dependencies</descriptorRef>
</descriptorRefs>
</configuration>
</plugin>
<plugin>
<groupId>org.antlr</groupId>
<artifactId>antlr4-maven-plugin</artifactId>
<version>4.13.0</version>
<executions>
<execution>
<goals>
<goal>antlr4</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.11.0</version>
<configuration>
<source>11</source>
<target>11</target>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-dependency-plugin</artifactId>
<version>3.6.0</version>
<executions>
<execution>
<phase>package</phase>
<goals>
<goal>copy-dependencies</goal>
</goals>
<configuration>
<includeScope>runtime</includeScope>
<excludeScope>provided</excludeScope>
<outputDirectory>${project.build.directory}/lib</outputDirectory>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-jar-plugin</artifactId>
<version>3.3.0</version>
<configuration>
<archive>
<manifest>
<addClasspath>true</addClasspath>
<classpathPrefix>lib/</classpathPrefix>
<mainClass>org.colomoto.biolqm.LQMLauncher</mainClass>
<useUniqueVersions>false</useUniqueVersions>
</manifest>
</archive>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.5.0</version>
<executions>
<execution>
<id>attach-javadocs</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.3.0</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-surefire-plugin</artifactId>
<version>3.1.2</version>
<configuration>
<forkCount>1</forkCount>
<useSystemClassLoader>false</useSystemClassLoader>
</configuration>
</plugin>
</plugins>
</build>
<profiles>
<profile>
<id>gh-pkg</id>
<distributionManagement>
<repository>
<id>github</id>
<name>GitHub Packages</name>
<url>https://maven.pkg.github.com/colomoto/bioLQM</url>
</repository>
</distributionManagement>
</profile>
<profile>
<id>mvn-pkg</id>
<distributionManagement>
<snapshotRepository>
<id>ossrh</id>
<url>https://oss.sonatype.org/content/repositories/snapshots</url>
</snapshotRepository>
<repository>
<id>ossrh</id>
<url>https://oss.sonatype.org/service/local/staging/deploy/maven2/</url>
</repository>
</distributionManagement>
</profile>
</profiles>
</project>