CoAdapTree
- Vancouver, BC, Canada
- http://coadaptree.forestry.ubc.ca
Popular repositories
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gatk_pipeline
gatk_pipeline PublicPipeline for processing raw fastq files through SNP calling with GATK and subsequent filtering
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varscan_pipeline
varscan_pipeline PublicPipeline for CoAdapTree to autonomously process raw fastq files through SNP calling with VarScan and subsequent filtering following bioinformatic best practices.
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ConvergenceAnalysis
ConvergenceAnalysis PublicA repo containing the scripts to perform the convergence analysis on GEA results
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pypoolation
pypoolation Publicpython scripts for population genetic statistics for data coming out of the varscan pipeline
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Repositories
- gatk_pipeline Public
Pipeline for processing raw fastq files through SNP calling with GATK and subsequent filtering
- pypoolation Public
python scripts for population genetic statistics for data coming out of the varscan pipeline
- varscan_pipeline Public
Pipeline for CoAdapTree to autonomously process raw fastq files through SNP calling with VarScan and subsequent filtering following bioinformatic best practices.
- cmh_test Public Forked from brandonlind/cmh_test
This code takes output from the VarScan pipeline and calculates Cochran-Mantel-Haenszel chi-squared tests on stratified contingency tables of read counts standardized by population ploidy.
- testdata_validation Public Forked from brandonlind/testdata_validation
Code to validate poolSeq data using indSeq data for comparison
- ConvergenceAnalysis Public
A repo containing the scripts to perform the convergence analysis on GEA results
- misc_tools-LD_r2_decay_plots Public
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- convergence Public