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@CoAdapTree

CoAdapTree

Healthy Trees for Future Climates, Healthy Code for Future Research

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  1. gatk_pipeline gatk_pipeline Public

    Pipeline for processing raw fastq files through SNP calling with GATK and subsequent filtering

    Python 3 4

  2. WZA WZA Public

    A repository containing the analysis scripts and simulation configuration files to accompany our project on the Weighted-Z Analysis for GEA (WZA)

    R 3 3

  3. varscan_pipeline varscan_pipeline Public

    Pipeline for CoAdapTree to autonomously process raw fastq files through SNP calling with VarScan and subsequent filtering following bioinformatic best practices.

    Shell 2 3

  4. ConvergenceAnalysis ConvergenceAnalysis Public

    A repo containing the scripts to perform the convergence analysis on GEA results

    HTML 1

  5. GEA GEA Public

    Single directory with links to all GEA efforts

    R

  6. pypoolation pypoolation Public

    python scripts for population genetic statistics for data coming out of the varscan pipeline

    Python 1

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