Running a forward model - reading in bathymetry file failure

[saeedmohanna]

Hello,

I am trying to run a forward model for a tsunami and I get the following error when running make .plots:

I'm not sure what could be causing this as the file is not that large (44.9 MB)

Please advise.

Thanks.

Best,
Saeed.

[mandli]

Can you provide more of the output? There's nothing that should cause that to occur off-hand.

[saeedmohanna]

Sure, here's the rest:

[mandli]

My best guess is that there's something wrong with your topography file. I do not suppose you could post it somewhere so one of us could download the file and see if we can figure out what is wrong?

[saeedmohanna]

Thanks for the prompt response. Attached is the topo file (type 3). The original version was in type 1 (too large to be allowed to be uploaded by github) - I read it in and converted it to type 3.
type3topo.zip

[mandli]

I can read the topography file fine so that is not it. Attached is a zip file with a working Makefileand setrun.py that runs to completion. Can you send your setrun.py maybe?
scripts.zip

[saeedmohanna]

Here's my setrun.py

setrun.zip

[mandli]

Can you also send the dtopo file?

[saeedmohanna]

I was able to fix it! The dtopo file type I specified was type 1 which I thought was correct as my dtopo file had 3 columns (x,y,z). However, I forgot that geoclaw's type 1 dtopo file actually had 4 columns which I think are level, x, y , and z. When I used the correct format of dtopo_type=1, the code ran successfully! Thank you for your help

[mandli]

The dtopo type 1 is t, x, y, dz I believe, level is not part of it.