Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

INFO commands #349

Open
JihyunKiminGithub opened this issue Jan 7, 2024 · 1 comment
Open

INFO commands #349

JihyunKiminGithub opened this issue Jan 7, 2024 · 1 comment
Assignees
@choishingwan
Labels
bug

Comments

@JihyunKiminGithub
Copy link

Dear author,

Thank you for creating this fantastic tool.
I have a question about the info commands.
I set the info criteria to 0.9 when I ran the command, but I noticed that several SNPs with a value of 0.893~0.899 were included in the final model.
Does PRSice-2 round up these values for use?

Thank you,
Jihyun.
@choishingwan
Copy link
Owner

It was not round up, though there might be rounding error. Were these SNPs INFO presented in the GWAS file?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@choishingwan choishingwan

Labels
bug
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@choishingwan @JihyunKiminGithub