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[BUG]PRS model-fit #300

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JY879013005 opened this issue Jul 24, 2022 · 1 comment
Open

[BUG]PRS model-fit #300

JY879013005 opened this issue Jul 24, 2022 · 1 comment
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@JY879013005
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Describe the bug
A clear and concise description of what the bug is.
I have a question about the output result PRS model-fit hope to get help.
I set a threshold interval of 5 × 10^5 to 0.5 with an increment of 5 × 10^5. But the results shown in the PRS model-fit result file ([Name].prsice) are only 241 instead of the 10000. The following figures are the log file and the output result file respectively.

image

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Thank you and best wishes!

Error Log
Please always include the log file generated by PRSice.

To Reproduce
If possible, provide a minimum working example for me to reproduce the problem. This can usually speed up the debugging process.

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@choishingwan
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PRSice is lazy in that, if the next threshold does not include more SNPs, it will ignore that and move on. As a result of that, we won't see all the thresholds in the result file

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