I have minimised the threads but still cant run.

[NeeluBegum]

I keep getting this error when i run. It stops at INFO: PanGuess: Running Exonerate searches on 3 threads according to the log. I am just running the testconfig.ini

File "/anaconda2/envs/python2/lib/python2.7/multiprocessing/pool.py", line 572, in get
raise self._value
OSError: [Errno 13] Permission denied

[chmccarthy]

Hi Neelu,

I've responded to this elsewhere but just to repeat it here I think the issue is that Pangloss can't run Exonerate for some reason. Check that you can run Exonerate independently through the command line and that Exonerate has executable permissions.

[qbdong]

Hi, I have the same error with you. I can run Exonerate independently through the command line ,but I still got the error,like this
File "/home/qbdong/miniconda3/envs/pangloss/lib/python2.7/multiprocessing/pool.py", line 567, in get
raise self._value
AssertionError
How can I solve it? Thank you

[JamiePike]

Hello,

I am also having an issue with exonerate. Although this may be a problem with my set up.

I have run Pangloss successfully on the test data. However, if I run it on my data I get an error message when performing gene prediction on the second fasta listed in genomes. txt.

With this error:

Pangloss successfully performs gene prediction for the first fasta in genome.txt, but stops at 'INFO:PanGuess: Running Exonerate searches on 9 threads' on the second fasta.

I have so far been unable to work out why it will not run on the second fasta. I have tried swapping the second fasta for others, but it still fails on the second. Are you able to help?

[qbdong]

Hello,

I am also having an issue with exonerate. Although this may be a problem with my set up.

I have run Pangloss successfully on the test data. However, if I run it on my data I get an error message when performing gene prediction on the second fasta listed in genomes. txt.

With this error:

Pangloss successfully performs gene prediction for the first fasta in genome.txt, but stops at 'INFO:PanGuess: Running Exonerate searches on 9 threads' on the second fasta.

I have so far been unable to work out why it will not run on the second fasta. I have tried swapping the second fasta for others, but it still fails on the second. Are you able to help?

Sorry， I still don't solve my error, I'm sorry I can't help you