notebooks/Comparing-TF-and-PT-models-SQuAD.ipynb

{
 "cells": [
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Comparing TensorFlow (original) and PyTorch model on the SQuAD task\n",
    "\n",
    "You can use this small notebook to check the loss computation from the TensorFlow model to the PyTorch model. In the following, we compare the total loss computed by the models starting from identical initializations (position prediction linear layers with weights at 1 and bias at 0).\n",
    "\n",
    "To run this notebook, follow these instructions:\n",
    "- make sure that your Python environment has both TensorFlow and PyTorch installed,\n",
    "- download the original TensorFlow implementation,\n",
    "- download a pre-trained TensorFlow model as indicaded in the TensorFlow implementation readme,\n",
    "- run the script `convert_tf_checkpoint_to_pytorch.py` as indicated in the `README` to convert the pre-trained TensorFlow model to PyTorch.\n",
    "\n",
    "If needed change the relative paths indicated in this notebook (at the beggining of Sections 1 and 2) to point to the relevent models and code."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:33.636911Z",
     "start_time": "2018-11-06T10:11:33.623091Z"
    }
   },
   "outputs": [],
   "source": [
    "import os\n",
    "os.chdir('../')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## 1/ TensorFlow code"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:33.651792Z",
     "start_time": "2018-11-06T10:11:33.638984Z"
    }
   },
   "outputs": [],
   "source": [
    "original_tf_inplem_dir = \"./tensorflow_code/\"\n",
    "model_dir = \"../google_models/uncased_L-12_H-768_A-12/\"\n",
    "\n",
    "vocab_file = model_dir + \"vocab.txt\"\n",
    "bert_config_file = model_dir + \"bert_config.json\"\n",
    "init_checkpoint = model_dir + \"bert_model.ckpt\"\n",
    "\n",
    "input_file = \"../data/squad_data/train-v1.1.json\"\n",
    "max_seq_length = 384\n",
    "outside_pos = max_seq_length + 10\n",
    "doc_stride = 128\n",
    "max_query_length = 64\n",
    "max_answer_length = 30\n",
    "output_dir = \"/tmp/squad_base/\"\n",
    "learning_rate = 3e-5"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:35.165788Z",
     "start_time": "2018-11-06T10:11:33.653401Z"
    }
   },
   "outputs": [],
   "source": [
    "import importlib.util\n",
    "import sys\n",
    "\n",
    "spec = importlib.util.spec_from_file_location('*', original_tf_inplem_dir + '/modeling.py')\n",
    "module = importlib.util.module_from_spec(spec)\n",
    "spec.loader.exec_module(module)\n",
    "sys.modules['modeling_tensorflow'] = module\n",
    "\n",
    "spec = importlib.util.spec_from_file_location('*', original_tf_inplem_dir + '/run_squad.py')\n",
    "module = importlib.util.module_from_spec(spec)\n",
    "spec.loader.exec_module(module)\n",
    "sys.modules['run_squad_tensorflow'] = module\n",
    "import modeling_tensorflow\n",
    "from run_squad_tensorflow import *"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:37.494391Z",
     "start_time": "2018-11-06T10:11:35.168615Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000000\n",
      "INFO:tensorflow:example_index: 0\n",
      "INFO:tensorflow:doc_span_index: 0\n",
      "INFO:tensorflow:tokens: [CLS] to whom did the virgin mary allegedly appear in 1858 in lou ##rdes france ? [SEP] architectural ##ly , the school has a catholic character . atop the main building ' s gold dome is a golden statue of the virgin mary . immediately in front of the main building and facing it , is a copper statue of christ with arms up ##rai ##sed with the legend \" ve ##ni ##te ad me om ##nes \" . next to the main building is the basilica of the sacred heart . immediately behind the basilica is the gr ##otto , a marian place of prayer and reflection . it is a replica of the gr ##otto at lou ##rdes , france where the virgin mary reputed ##ly appeared to saint bern ##ade ##tte so ##ub ##iro ##us in 1858 . at the end of the main drive ( and in a direct line that connects through 3 statues and the gold dome ) , is a simple , modern stone statue of mary . [SEP]\n",
      "INFO:tensorflow:token_to_orig_map: 17:0 18:0 19:0 20:1 21:2 22:3 23:4 24:5 25:6 26:6 27:7 28:8 29:9 30:10 31:10 32:10 33:11 34:12 35:13 36:14 37:15 38:16 39:17 40:18 41:19 42:20 43:20 44:21 45:22 46:23 47:24 48:25 49:26 50:27 51:28 52:29 53:30 54:30 55:31 56:32 57:33 58:34 59:35 60:36 61:37 62:38 63:39 64:39 65:39 66:40 67:41 68:42 69:43 70:43 71:43 72:43 73:44 74:45 75:46 76:46 77:46 78:46 79:47 80:48 81:49 82:50 83:51 84:52 85:53 86:54 87:55 88:56 89:57 90:58 91:58 92:59 93:60 94:61 95:62 96:63 97:64 98:65 99:65 100:65 101:66 102:67 103:68 104:69 105:70 106:71 107:72 108:72 109:73 110:74 111:75 112:76 113:77 114:78 115:79 116:79 117:80 118:81 119:81 120:81 121:82 122:83 123:84 124:85 125:86 126:87 127:87 128:88 129:89 130:90 131:91 132:91 133:91 134:92 135:92 136:92 137:92 138:93 139:94 140:94 141:95 142:96 143:97 144:98 145:99 146:100 147:101 148:102 149:102 150:103 151:104 152:105 153:106 154:107 155:108 156:109 157:110 158:111 159:112 160:113 161:114 162:115 163:115 164:115 165:116 166:117 167:118 168:118 169:119 170:120 171:121 172:122 173:123 174:123\n",
      "INFO:tensorflow:token_is_max_context: 17:True 18:True 19:True 20:True 21:True 22:True 23:True 24:True 25:True 26:True 27:True 28:True 29:True 30:True 31:True 32:True 33:True 34:True 35:True 36:True 37:True 38:True 39:True 40:True 41:True 42:True 43:True 44:True 45:True 46:True 47:True 48:True 49:True 50:True 51:True 52:True 53:True 54:True 55:True 56:True 57:True 58:True 59:True 60:True 61:True 62:True 63:True 64:True 65:True 66:True 67:True 68:True 69:True 70:True 71:True 72:True 73:True 74:True 75:True 76:True 77:True 78:True 79:True 80:True 81:True 82:True 83:True 84:True 85:True 86:True 87:True 88:True 89:True 90:True 91:True 92:True 93:True 94:True 95:True 96:True 97:True 98:True 99:True 100:True 101:True 102:True 103:True 104:True 105:True 106:True 107:True 108:True 109:True 110:True 111:True 112:True 113:True 114:True 115:True 116:True 117:True 118:True 119:True 120:True 121:True 122:True 123:True 124:True 125:True 126:True 127:True 128:True 129:True 130:True 131:True 132:True 133:True 134:True 135:True 136:True 137:True 138:True 139:True 140:True 141:True 142:True 143:True 144:True 145:True 146:True 147:True 148:True 149:True 150:True 151:True 152:True 153:True 154:True 155:True 156:True 157:True 158:True 159:True 160:True 161:True 162:True 163:True 164:True 165:True 166:True 167:True 168:True 169:True 170:True 171:True 172:True 173:True 174:True\n",
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      "INFO:tensorflow:start_position: 130\n",
      "INFO:tensorflow:end_position: 137\n",
      "INFO:tensorflow:answer: saint bern ##ade ##tte so ##ub ##iro ##us\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000001\n",
      "INFO:tensorflow:example_index: 1\n",
      "INFO:tensorflow:doc_span_index: 0\n",
      "INFO:tensorflow:tokens: [CLS] what is in front of the notre dame main building ? [SEP] architectural ##ly , the school has a catholic character . atop the main building ' s gold dome is a golden statue of the virgin mary . immediately in front of the main building and facing it , is a copper statue of christ with arms up ##rai ##sed with the legend \" ve ##ni ##te ad me om ##nes \" . next to the main building is the basilica of the sacred heart . immediately behind the basilica is the gr ##otto , a marian place of prayer and reflection . it is a replica of the gr ##otto at lou ##rdes , france where the virgin mary reputed ##ly appeared to saint bern ##ade ##tte so ##ub ##iro ##us in 1858 . at the end of the main drive ( and in a direct line that connects through 3 statues and the gold dome ) , is a simple , modern stone statue of mary . [SEP]\n",
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      "INFO:tensorflow:start_position: 52\n",
      "INFO:tensorflow:end_position: 56\n",
      "INFO:tensorflow:answer: a copper statue of christ\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000002\n",
      "INFO:tensorflow:example_index: 2\n",
      "INFO:tensorflow:doc_span_index: 0\n",
      "INFO:tensorflow:tokens: [CLS] the basilica of the sacred heart at notre dame is beside to which structure ? [SEP] architectural ##ly , the school has a catholic character . atop the main building ' s gold dome is a golden statue of the virgin mary . immediately in front of the main building and facing it , is a copper statue of christ with arms up ##rai ##sed with the legend \" ve ##ni ##te ad me om ##nes \" . next to the main building is the basilica of the sacred heart . immediately behind the basilica is the gr ##otto , a marian place of prayer and reflection . it is a replica of the gr ##otto at lou ##rdes , france where the virgin mary reputed ##ly appeared to saint bern ##ade ##tte so ##ub ##iro ##us in 1858 . at the end of the main drive ( and in a direct line that connects through 3 statues and the gold dome ) , is a simple , modern stone statue of mary . [SEP]\n",
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      "INFO:tensorflow:answer: the main building\n",
      "INFO:tensorflow:*** Example ***\n",
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      "INFO:tensorflow:answer: a marian place of prayer and reflection\n",
      "INFO:tensorflow:*** Example ***\n"
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      "INFO:tensorflow:answer: a golden statue of the virgin mary\n",
      "INFO:tensorflow:*** Example ***\n",
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      "INFO:tensorflow:start_position: 63\n",
      "INFO:tensorflow:end_position: 64\n",
      "INFO:tensorflow:answer: september 1876\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000006\n",
      "INFO:tensorflow:example_index: 6\n",
      "INFO:tensorflow:doc_span_index: 0\n",
      "INFO:tensorflow:tokens: [CLS] how often is notre dame ' s the jug ##gler published ? [SEP] as at most other universities , notre dame ' s students run a number of news media outlets . the nine student - run outlets include three newspapers , both a radio and television station , and several magazines and journals . begun as a one - page journal in september 1876 , the scholastic magazine is issued twice monthly and claims to be the oldest continuous collegiate publication in the united states . the other magazine , the jug ##gler , is released twice a year and focuses on student literature and artwork . the dome yearbook is published annually . the newspapers have varying publication interests , with the observer published daily and mainly reporting university and other news , and staffed by students from both notre dame and saint mary ' s college . unlike scholastic and the dome , the observer is an independent publication and does not have a faculty advisor or any editorial oversight from the university . in 1987 , when some students believed that the observer began to show a conservative bias , a liberal newspaper , common sense was published . likewise , in 2003 , when other students believed that the paper showed a liberal bias , the conservative paper irish rover went into production . neither paper is published as often as the observer ; however , all three are distributed to all students . finally , in spring 2008 an undergraduate journal for political science research , beyond politics , made its debut . [SEP]\n",
      "INFO:tensorflow:token_to_orig_map: 14:0 15:1 16:2 17:3 18:4 19:4 20:5 21:6 22:6 23:6 24:7 25:8 26:9 27:10 28:11 29:12 30:13 31:14 32:14 33:15 34:16 35:17 36:17 37:17 38:18 39:19 40:20 41:21 42:21 43:22 44:23 45:24 46:25 47:26 48:27 49:27 50:28 51:29 52:30 53:31 54:32 55:32 56:33 57:34 58:35 59:36 60:36 61:36 62:37 63:38 64:39 65:40 66:40 67:41 68:42 69:43 70:44 71:45 72:46 73:47 74:48 75:49 76:50 77:51 78:52 79:53 80:54 81:55 82:56 83:57 84:58 85:59 86:60 87:60 88:61 89:62 90:63 91:63 92:64 93:65 94:65 95:65 96:66 97:67 98:68 99:69 100:70 101:71 102:72 103:73 104:74 105:75 106:76 107:77 108:77 109:78 110:79 111:80 112:81 113:82 114:83 115:83 116:84 117:85 118:86 119:87 120:88 121:89 122:89 123:90 124:91 125:92 126:93 127:94 128:95 129:96 130:97 131:98 132:99 133:100 134:101 135:101 136:102 137:103 138:104 139:105 140:106 141:107 142:108 143:109 144:110 145:111 146:112 147:112 148:112 149:113 150:113 151:114 152:115 153:116 154:117 155:118 156:118 157:119 158:120 159:121 160:122 161:123 162:124 163:125 164:126 165:127 166:128 167:129 168:130 169:131 170:132 171:133 172:134 173:135 174:136 175:137 176:138 177:138 178:139 179:140 180:140 181:141 182:142 183:143 184:144 185:145 186:146 187:147 188:148 189:149 190:150 191:151 192:152 193:153 194:153 195:154 196:155 197:156 198:156 199:157 200:158 201:159 202:160 203:160 204:161 205:161 206:162 207:163 208:163 209:164 210:165 211:166 212:167 213:168 214:169 215:170 216:171 217:172 218:173 219:174 220:174 221:175 222:176 223:177 224:178 225:179 226:180 227:181 228:182 229:182 230:183 231:184 232:185 233:186 234:187 235:188 236:189 237:190 238:191 239:191 240:192 241:192 242:193 243:194 244:195 245:196 246:197 247:198 248:199 249:199 250:200 251:200 252:201 253:202 254:203 255:204 256:205 257:206 258:207 259:208 260:209 261:210 262:210 263:211 264:212 265:212 266:213 267:214 268:215 269:215\n"
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      "INFO:tensorflow:start_position: 98\n",
      "INFO:tensorflow:end_position: 98\n",
      "INFO:tensorflow:answer: twice\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000007\n",
      "INFO:tensorflow:example_index: 7\n",
      "INFO:tensorflow:doc_span_index: 0\n",
      "INFO:tensorflow:tokens: [CLS] what is the daily student paper at notre dame called ? [SEP] as at most other universities , notre dame ' s students run a number of news media outlets . the nine student - run outlets include three newspapers , both a radio and television station , and several magazines and journals . begun as a one - page journal in september 1876 , the scholastic magazine is issued twice monthly and claims to be the oldest continuous collegiate publication in the united states . the other magazine , the jug ##gler , is released twice a year and focuses on student literature and artwork . the dome yearbook is published annually . the newspapers have varying publication interests , with the observer published daily and mainly reporting university and other news , and staffed by students from both notre dame and saint mary ' s college . unlike scholastic and the dome , the observer is an independent publication and does not have a faculty advisor or any editorial oversight from the university . in 1987 , when some students believed that the observer began to show a conservative bias , a liberal newspaper , common sense was published . likewise , in 2003 , when other students believed that the paper showed a liberal bias , the conservative paper irish rover went into production . neither paper is published as often as the observer ; however , all three are distributed to all students . finally , in spring 2008 an undergraduate journal for political science research , beyond politics , made its debut . [SEP]\n",
      "INFO:tensorflow:token_to_orig_map: 13:0 14:1 15:2 16:3 17:4 18:4 19:5 20:6 21:6 22:6 23:7 24:8 25:9 26:10 27:11 28:12 29:13 30:14 31:14 32:15 33:16 34:17 35:17 36:17 37:18 38:19 39:20 40:21 41:21 42:22 43:23 44:24 45:25 46:26 47:27 48:27 49:28 50:29 51:30 52:31 53:32 54:32 55:33 56:34 57:35 58:36 59:36 60:36 61:37 62:38 63:39 64:40 65:40 66:41 67:42 68:43 69:44 70:45 71:46 72:47 73:48 74:49 75:50 76:51 77:52 78:53 79:54 80:55 81:56 82:57 83:58 84:59 85:60 86:60 87:61 88:62 89:63 90:63 91:64 92:65 93:65 94:65 95:66 96:67 97:68 98:69 99:70 100:71 101:72 102:73 103:74 104:75 105:76 106:77 107:77 108:78 109:79 110:80 111:81 112:82 113:83 114:83 115:84 116:85 117:86 118:87 119:88 120:89 121:89 122:90 123:91 124:92 125:93 126:94 127:95 128:96 129:97 130:98 131:99 132:100 133:101 134:101 135:102 136:103 137:104 138:105 139:106 140:107 141:108 142:109 143:110 144:111 145:112 146:112 147:112 148:113 149:113 150:114 151:115 152:116 153:117 154:118 155:118 156:119 157:120 158:121 159:122 160:123 161:124 162:125 163:126 164:127 165:128 166:129 167:130 168:131 169:132 170:133 171:134 172:135 173:136 174:137 175:138 176:138 177:139 178:140 179:140 180:141 181:142 182:143 183:144 184:145 185:146 186:147 187:148 188:149 189:150 190:151 191:152 192:153 193:153 194:154 195:155 196:156 197:156 198:157 199:158 200:159 201:160 202:160 203:161 204:161 205:162 206:163 207:163 208:164 209:165 210:166 211:167 212:168 213:169 214:170 215:171 216:172 217:173 218:174 219:174 220:175 221:176 222:177 223:178 224:179 225:180 226:181 227:182 228:182 229:183 230:184 231:185 232:186 233:187 234:188 235:189 236:190 237:191 238:191 239:192 240:192 241:193 242:194 243:195 244:196 245:197 246:198 247:199 248:199 249:200 250:200 251:201 252:202 253:203 254:204 255:205 256:206 257:207 258:208 259:209 260:210 261:210 262:211 263:212 264:212 265:213 266:214 267:215 268:215\n"
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      "INFO:tensorflow:start_position: 123\n",
      "INFO:tensorflow:end_position: 124\n",
      "INFO:tensorflow:answer: the observer\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000008\n",
      "INFO:tensorflow:example_index: 8\n",
      "INFO:tensorflow:doc_span_index: 0\n",
      "INFO:tensorflow:tokens: [CLS] how many student news papers are found at notre dame ? [SEP] as at most other universities , notre dame ' s students run a number of news media outlets . the nine student - run outlets include three newspapers , both a radio and television station , and several magazines and journals . begun as a one - page journal in september 1876 , the scholastic magazine is issued twice monthly and claims to be the oldest continuous collegiate publication in the united states . the other magazine , the jug ##gler , is released twice a year and focuses on student literature and artwork . the dome yearbook is published annually . the newspapers have varying publication interests , with the observer published daily and mainly reporting university and other news , and staffed by students from both notre dame and saint mary ' s college . unlike scholastic and the dome , the observer is an independent publication and does not have a faculty advisor or any editorial oversight from the university . in 1987 , when some students believed that the observer began to show a conservative bias , a liberal newspaper , common sense was published . likewise , in 2003 , when other students believed that the paper showed a liberal bias , the conservative paper irish rover went into production . neither paper is published as often as the observer ; however , all three are distributed to all students . finally , in spring 2008 an undergraduate journal for political science research , beyond politics , made its debut . [SEP]\n",
      "INFO:tensorflow:token_to_orig_map: 13:0 14:1 15:2 16:3 17:4 18:4 19:5 20:6 21:6 22:6 23:7 24:8 25:9 26:10 27:11 28:12 29:13 30:14 31:14 32:15 33:16 34:17 35:17 36:17 37:18 38:19 39:20 40:21 41:21 42:22 43:23 44:24 45:25 46:26 47:27 48:27 49:28 50:29 51:30 52:31 53:32 54:32 55:33 56:34 57:35 58:36 59:36 60:36 61:37 62:38 63:39 64:40 65:40 66:41 67:42 68:43 69:44 70:45 71:46 72:47 73:48 74:49 75:50 76:51 77:52 78:53 79:54 80:55 81:56 82:57 83:58 84:59 85:60 86:60 87:61 88:62 89:63 90:63 91:64 92:65 93:65 94:65 95:66 96:67 97:68 98:69 99:70 100:71 101:72 102:73 103:74 104:75 105:76 106:77 107:77 108:78 109:79 110:80 111:81 112:82 113:83 114:83 115:84 116:85 117:86 118:87 119:88 120:89 121:89 122:90 123:91 124:92 125:93 126:94 127:95 128:96 129:97 130:98 131:99 132:100 133:101 134:101 135:102 136:103 137:104 138:105 139:106 140:107 141:108 142:109 143:110 144:111 145:112 146:112 147:112 148:113 149:113 150:114 151:115 152:116 153:117 154:118 155:118 156:119 157:120 158:121 159:122 160:123 161:124 162:125 163:126 164:127 165:128 166:129 167:130 168:131 169:132 170:133 171:134 172:135 173:136 174:137 175:138 176:138 177:139 178:140 179:140 180:141 181:142 182:143 183:144 184:145 185:146 186:147 187:148 188:149 189:150 190:151 191:152 192:153 193:153 194:154 195:155 196:156 197:156 198:157 199:158 200:159 201:160 202:160 203:161 204:161 205:162 206:163 207:163 208:164 209:165 210:166 211:167 212:168 213:169 214:170 215:171 216:172 217:173 218:174 219:174 220:175 221:176 222:177 223:178 224:179 225:180 226:181 227:182 228:182 229:183 230:184 231:185 232:186 233:187 234:188 235:189 236:190 237:191 238:191 239:192 240:192 241:193 242:194 243:195 244:196 245:197 246:198 247:199 248:199 249:200 250:200 251:201 252:202 253:203 254:204 255:205 256:206 257:207 258:208 259:209 260:210 261:210 262:211 263:212 264:212 265:213 266:214 267:215 268:215\n"
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      "INFO:tensorflow:start_position: 39\n",
      "INFO:tensorflow:end_position: 39\n",
      "INFO:tensorflow:answer: three\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000009\n",
      "INFO:tensorflow:example_index: 9\n",
      "INFO:tensorflow:doc_span_index: 0\n",
      "INFO:tensorflow:tokens: [CLS] in what year did the student paper common sense begin publication at notre dame ? [SEP] as at most other universities , notre dame ' s students run a number of news media outlets . the nine student - run outlets include three newspapers , both a radio and television station , and several magazines and journals . begun as a one - page journal in september 1876 , the scholastic magazine is issued twice monthly and claims to be the oldest continuous collegiate publication in the united states . the other magazine , the jug ##gler , is released twice a year and focuses on student literature and artwork . the dome yearbook is published annually . the newspapers have varying publication interests , with the observer published daily and mainly reporting university and other news , and staffed by students from both notre dame and saint mary ' s college . unlike scholastic and the dome , the observer is an independent publication and does not have a faculty advisor or any editorial oversight from the university . in 1987 , when some students believed that the observer began to show a conservative bias , a liberal newspaper , common sense was published . likewise , in 2003 , when other students believed that the paper showed a liberal bias , the conservative paper irish rover went into production . neither paper is published as often as the observer ; however , all three are distributed to all students . finally , in spring 2008 an undergraduate journal for political science research , beyond politics , made its debut . [SEP]\n",
      "INFO:tensorflow:token_to_orig_map: 17:0 18:1 19:2 20:3 21:4 22:4 23:5 24:6 25:6 26:6 27:7 28:8 29:9 30:10 31:11 32:12 33:13 34:14 35:14 36:15 37:16 38:17 39:17 40:17 41:18 42:19 43:20 44:21 45:21 46:22 47:23 48:24 49:25 50:26 51:27 52:27 53:28 54:29 55:30 56:31 57:32 58:32 59:33 60:34 61:35 62:36 63:36 64:36 65:37 66:38 67:39 68:40 69:40 70:41 71:42 72:43 73:44 74:45 75:46 76:47 77:48 78:49 79:50 80:51 81:52 82:53 83:54 84:55 85:56 86:57 87:58 88:59 89:60 90:60 91:61 92:62 93:63 94:63 95:64 96:65 97:65 98:65 99:66 100:67 101:68 102:69 103:70 104:71 105:72 106:73 107:74 108:75 109:76 110:77 111:77 112:78 113:79 114:80 115:81 116:82 117:83 118:83 119:84 120:85 121:86 122:87 123:88 124:89 125:89 126:90 127:91 128:92 129:93 130:94 131:95 132:96 133:97 134:98 135:99 136:100 137:101 138:101 139:102 140:103 141:104 142:105 143:106 144:107 145:108 146:109 147:110 148:111 149:112 150:112 151:112 152:113 153:113 154:114 155:115 156:116 157:117 158:118 159:118 160:119 161:120 162:121 163:122 164:123 165:124 166:125 167:126 168:127 169:128 170:129 171:130 172:131 173:132 174:133 175:134 176:135 177:136 178:137 179:138 180:138 181:139 182:140 183:140 184:141 185:142 186:143 187:144 188:145 189:146 190:147 191:148 192:149 193:150 194:151 195:152 196:153 197:153 198:154 199:155 200:156 201:156 202:157 203:158 204:159 205:160 206:160 207:161 208:161 209:162 210:163 211:163 212:164 213:165 214:166 215:167 216:168 217:169 218:170 219:171 220:172 221:173 222:174 223:174 224:175 225:176 226:177 227:178 228:179 229:180 230:181 231:182 232:182 233:183 234:184 235:185 236:186 237:187 238:188 239:189 240:190 241:191 242:191 243:192 244:192 245:193 246:194 247:195 248:196 249:197 250:198 251:199 252:199 253:200 254:200 255:201 256:202 257:203 258:204 259:205 260:206 261:207 262:208 263:209 264:210 265:210 266:211 267:212 268:212 269:213 270:214 271:215 272:215\n"
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      "INFO:tensorflow:answer: 1987\n",
      "INFO:tensorflow:*** Example ***\n",
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      "INFO:tensorflow:answer: rome\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000011\n",
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      "INFO:tensorflow:answer: more ##au seminary\n",
      "INFO:tensorflow:*** Example ***\n",
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      "INFO:tensorflow:answer: old college\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000013\n",
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      "INFO:tensorflow:start_position: 84\n",
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      "INFO:tensorflow:answer: retired priests and brothers\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000014\n",
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      "INFO:tensorflow:start_position: 149\n",
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      "INFO:tensorflow:answer: bu ##ech ##ner prize for preaching\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000015\n",
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      "INFO:tensorflow:answer: eight\n",
      "INFO:tensorflow:*** Example ***\n",
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      "INFO:tensorflow:answer: 1920\n",
      "INFO:tensorflow:*** Example ***\n",
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      "INFO:tensorflow:tokens: [CLS] before the creation of the college of engineering similar studies were carried out at which notre dame college ? [SEP] the college of engineering was established in 1920 , however , early courses in civil and mechanical engineering were a part of the college of science since the 1870s . today the college , housed in the fitzpatrick , cu ##shing , and st ##ins ##on - re ##mic ##k halls of engineering , includes five departments of study – aerospace and mechanical engineering , chemical and bio ##mo ##le ##cular engineering , civil engineering and geological sciences , computer science and engineering , and electrical engineering – with eight b . s . degrees offered . additionally , the college offers five - year dual degree programs with the colleges of arts and letters and of business awarding additional b . a . and master of business administration ( mba ) degrees , respectively . [SEP]\n",
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      "INFO:tensorflow:answer: the college of science\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000018\n",
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      "INFO:tensorflow:tokens: [CLS] how many departments are within the st ##ins ##on - re ##mic ##k hall of engineering ? [SEP] the college of engineering was established in 1920 , however , early courses in civil and mechanical engineering were a part of the college of science since the 1870s . today the college , housed in the fitzpatrick , cu ##shing , and st ##ins ##on - re ##mic ##k halls of engineering , includes five departments of study – aerospace and mechanical engineering , chemical and bio ##mo ##le ##cular engineering , civil engineering and geological sciences , computer science and engineering , and electrical engineering – with eight b . s . degrees offered . additionally , the college offers five - year dual degree programs with the colleges of arts and letters and of business awarding additional b . a . and master of business administration ( mba ) degrees , respectively . [SEP]\n",
      "INFO:tensorflow:token_to_orig_map: 19:0 20:1 21:2 22:3 23:4 24:5 25:6 26:7 27:7 28:8 29:8 30:9 31:10 32:11 33:12 34:13 35:14 36:15 37:16 38:17 39:18 40:19 41:20 42:21 43:22 44:23 45:24 46:25 47:26 48:26 49:27 50:28 51:29 52:29 53:30 54:31 55:32 56:33 57:33 58:34 59:34 60:34 61:35 62:36 63:36 64:36 65:36 66:36 67:36 68:36 69:37 70:38 71:39 72:39 73:40 74:41 75:42 76:43 77:44 78:45 79:46 80:47 81:48 82:49 83:49 84:50 85:51 86:52 87:52 88:52 89:52 90:53 91:53 92:54 93:55 94:56 95:57 96:58 97:58 98:59 99:60 100:61 101:62 102:62 103:63 104:64 105:65 106:66 107:67 108:68 109:69 110:69 111:69 112:69 113:70 114:71 115:71 116:72 117:72 118:73 119:74 120:75 121:76 122:76 123:76 124:77 125:78 126:79 127:80 128:81 129:82 130:83 131:84 132:85 133:86 134:87 135:88 136:89 137:90 138:91 139:92 140:92 141:92 142:92 143:93 144:94 145:95 146:96 147:97 148:98 149:98 150:98 151:99 152:99 153:100 154:100\n",
      "INFO:tensorflow:token_is_max_context: 19:True 20:True 21:True 22:True 23:True 24:True 25:True 26:True 27:True 28:True 29:True 30:True 31:True 32:True 33:True 34:True 35:True 36:True 37:True 38:True 39:True 40:True 41:True 42:True 43:True 44:True 45:True 46:True 47:True 48:True 49:True 50:True 51:True 52:True 53:True 54:True 55:True 56:True 57:True 58:True 59:True 60:True 61:True 62:True 63:True 64:True 65:True 66:True 67:True 68:True 69:True 70:True 71:True 72:True 73:True 74:True 75:True 76:True 77:True 78:True 79:True 80:True 81:True 82:True 83:True 84:True 85:True 86:True 87:True 88:True 89:True 90:True 91:True 92:True 93:True 94:True 95:True 96:True 97:True 98:True 99:True 100:True 101:True 102:True 103:True 104:True 105:True 106:True 107:True 108:True 109:True 110:True 111:True 112:True 113:True 114:True 115:True 116:True 117:True 118:True 119:True 120:True 121:True 122:True 123:True 124:True 125:True 126:True 127:True 128:True 129:True 130:True 131:True 132:True 133:True 134:True 135:True 136:True 137:True 138:True 139:True 140:True 141:True 142:True 143:True 144:True 145:True 146:True 147:True 148:True 149:True 150:True 151:True 152:True 153:True 154:True\n",
      "INFO:tensorflow:input_ids: 101 2129 2116 7640 2024 2306 1996 2358 7076 2239 1011 2128 7712 2243 2534 1997 3330 1029 102 1996 2267 1997 3330 2001 2511 1999 4444 1010 2174 1010 2220 5352 1999 2942 1998 6228 3330 2020 1037 2112 1997 1996 2267 1997 2671 2144 1996 14896 1012 2651 1996 2267 1010 7431 1999 1996 26249 1010 12731 12227 1010 1998 2358 7076 2239 1011 2128 7712 2243 9873 1997 3330 1010 2950 2274 7640 1997 2817 1516 13395 1998 6228 3330 1010 5072 1998 16012 5302 2571 15431 3330 1010 2942 3330 1998 9843 4163 1010 3274 2671 1998 3330 1010 1998 5992 3330 1516 2007 2809 1038 1012 1055 1012 5445 3253 1012 5678 1010 1996 2267 4107 2274 1011 2095 7037 3014 3454 2007 1996 6667 1997 2840 1998 4144 1998 1997 2449 21467 3176 1038 1012 1037 1012 1998 3040 1997 2449 3447 1006 15038 1007 5445 1010 4414 1012 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0\n",
      "INFO:tensorflow:input_mask: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0\n",
      "INFO:tensorflow:segment_ids: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0\n",
      "INFO:tensorflow:start_position: 74\n",
      "INFO:tensorflow:end_position: 74\n",
      "INFO:tensorflow:answer: five\n",
      "INFO:tensorflow:*** Example ***\n",
      "INFO:tensorflow:unique_id: 1000000019\n",
      "INFO:tensorflow:example_index: 19\n",
      "INFO:tensorflow:doc_span_index: 0\n",
      "INFO:tensorflow:tokens: [CLS] the college of science began to offer civil engineering courses beginning at what time at notre dame ? [SEP] the college of engineering was established in 1920 , however , early courses in civil and mechanical engineering were a part of the college of science since the 1870s . today the college , housed in the fitzpatrick , cu ##shing , and st ##ins ##on - re ##mic ##k halls of engineering , includes five departments of study – aerospace and mechanical engineering , chemical and bio ##mo ##le ##cular engineering , civil engineering and geological sciences , computer science and engineering , and electrical engineering – with eight b . s . degrees offered . additionally , the college offers five - year dual degree programs with the colleges of arts and letters and of business awarding additional b . a . and master of business administration ( mba ) degrees , respectively . [SEP]\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "INFO:tensorflow:token_to_orig_map: 20:0 21:1 22:2 23:3 24:4 25:5 26:6 27:7 28:7 29:8 30:8 31:9 32:10 33:11 34:12 35:13 36:14 37:15 38:16 39:17 40:18 41:19 42:20 43:21 44:22 45:23 46:24 47:25 48:26 49:26 50:27 51:28 52:29 53:29 54:30 55:31 56:32 57:33 58:33 59:34 60:34 61:34 62:35 63:36 64:36 65:36 66:36 67:36 68:36 69:36 70:37 71:38 72:39 73:39 74:40 75:41 76:42 77:43 78:44 79:45 80:46 81:47 82:48 83:49 84:49 85:50 86:51 87:52 88:52 89:52 90:52 91:53 92:53 93:54 94:55 95:56 96:57 97:58 98:58 99:59 100:60 101:61 102:62 103:62 104:63 105:64 106:65 107:66 108:67 109:68 110:69 111:69 112:69 113:69 114:70 115:71 116:71 117:72 118:72 119:73 120:74 121:75 122:76 123:76 124:76 125:77 126:78 127:79 128:80 129:81 130:82 131:83 132:84 133:85 134:86 135:87 136:88 137:89 138:90 139:91 140:92 141:92 142:92 143:92 144:93 145:94 146:95 147:96 148:97 149:98 150:98 151:98 152:99 153:99 154:100 155:100\n",
      "INFO:tensorflow:token_is_max_context: 20:True 21:True 22:True 23:True 24:True 25:True 26:True 27:True 28:True 29:True 30:True 31:True 32:True 33:True 34:True 35:True 36:True 37:True 38:True 39:True 40:True 41:True 42:True 43:True 44:True 45:True 46:True 47:True 48:True 49:True 50:True 51:True 52:True 53:True 54:True 55:True 56:True 57:True 58:True 59:True 60:True 61:True 62:True 63:True 64:True 65:True 66:True 67:True 68:True 69:True 70:True 71:True 72:True 73:True 74:True 75:True 76:True 77:True 78:True 79:True 80:True 81:True 82:True 83:True 84:True 85:True 86:True 87:True 88:True 89:True 90:True 91:True 92:True 93:True 94:True 95:True 96:True 97:True 98:True 99:True 100:True 101:True 102:True 103:True 104:True 105:True 106:True 107:True 108:True 109:True 110:True 111:True 112:True 113:True 114:True 115:True 116:True 117:True 118:True 119:True 120:True 121:True 122:True 123:True 124:True 125:True 126:True 127:True 128:True 129:True 130:True 131:True 132:True 133:True 134:True 135:True 136:True 137:True 138:True 139:True 140:True 141:True 142:True 143:True 144:True 145:True 146:True 147:True 148:True 149:True 150:True 151:True 152:True 153:True 154:True 155:True\n",
      "INFO:tensorflow:input_ids: 101 1996 2267 1997 2671 2211 2000 3749 2942 3330 5352 2927 2012 2054 2051 2012 10289 8214 1029 102 1996 2267 1997 3330 2001 2511 1999 4444 1010 2174 1010 2220 5352 1999 2942 1998 6228 3330 2020 1037 2112 1997 1996 2267 1997 2671 2144 1996 14896 1012 2651 1996 2267 1010 7431 1999 1996 26249 1010 12731 12227 1010 1998 2358 7076 2239 1011 2128 7712 2243 9873 1997 3330 1010 2950 2274 7640 1997 2817 1516 13395 1998 6228 3330 1010 5072 1998 16012 5302 2571 15431 3330 1010 2942 3330 1998 9843 4163 1010 3274 2671 1998 3330 1010 1998 5992 3330 1516 2007 2809 1038 1012 1055 1012 5445 3253 1012 5678 1010 1996 2267 4107 2274 1011 2095 7037 3014 3454 2007 1996 6667 1997 2840 1998 4144 1998 1997 2449 21467 3176 1038 1012 1037 1012 1998 3040 1997 2449 3447 1006 15038 1007 5445 1010 4414 1012 102 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0\n",
      "INFO:tensorflow:input_mask: 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0\n",
      "INFO:tensorflow:segment_ids: 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0\n",
      "INFO:tensorflow:start_position: 47\n",
      "INFO:tensorflow:end_position: 48\n",
      "INFO:tensorflow:answer: the 1870s\n"
     ]
    }
   ],
   "source": [
    "bert_config = modeling_tensorflow.BertConfig.from_json_file(bert_config_file)\n",
    "tokenizer = tokenization.BertTokenizer(\n",
    "    vocab_file=vocab_file, do_lower_case=True)\n",
    "\n",
    "eval_examples = read_squad_examples(\n",
    "    input_file=input_file, is_training=True, max_num=16)\n",
    "\n",
    "eval_features = convert_examples_to_features(\n",
    "    examples=eval_examples,\n",
    "    tokenizer=tokenizer,\n",
    "    max_seq_length=max_seq_length,\n",
    "    doc_stride=doc_stride,\n",
    "    max_query_length=max_query_length,\n",
    "    is_training=True)\n",
    "\n",
    "# You can use that to test the behavior of the models when target are outside of the model input sequence\n",
    "# for feature in eval_features:\n",
    "#     feature.start_position = outside_pos\n",
    "#     feature.end_position = outside_pos"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:37.525632Z",
     "start_time": "2018-11-06T10:11:37.498695Z"
    }
   },
   "outputs": [],
   "source": [
    "eval_unique_id_to_feature = {}\n",
    "for eval_feature in eval_features:\n",
    "    eval_unique_id_to_feature[eval_feature.unique_id] = eval_feature"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:37.558325Z",
     "start_time": "2018-11-06T10:11:37.527972Z"
    }
   },
   "outputs": [],
   "source": [
    "def input_fn_builder(features, seq_length, drop_remainder):\n",
    "    \"\"\"Creates an `input_fn` closure to be passed to TPUEstimator.\"\"\"\n",
    "\n",
    "    all_unique_ids = []\n",
    "    all_input_ids = []\n",
    "    all_input_mask = []\n",
    "    all_segment_ids = []\n",
    "    all_start_positions = []\n",
    "    all_end_positions = []\n",
    "\n",
    "    for feature in features:\n",
    "        all_unique_ids.append(feature.unique_id)\n",
    "        all_input_ids.append(feature.input_ids)\n",
    "        all_input_mask.append(feature.input_mask)\n",
    "        all_segment_ids.append(feature.segment_ids)\n",
    "        all_start_positions.append(feature.start_position)\n",
    "        all_end_positions.append(feature.end_position)\n",
    "\n",
    "    def input_fn(params):\n",
    "        \"\"\"The actual input function.\"\"\"\n",
    "        batch_size = params[\"batch_size\"]\n",
    "\n",
    "        num_examples = len(features)\n",
    "\n",
    "        # This is for demo purposes and does NOT scale to large data sets. We do\n",
    "        # not use Dataset.from_generator() because that uses tf.py_func which is\n",
    "        # not TPU compatible. The right way to load data is with TFRecordReader.\n",
    "        feature_map = {\n",
    "            \"unique_ids\":\n",
    "                tf.constant(all_unique_ids, shape=[num_examples], dtype=tf.int32),\n",
    "            \"input_ids\":\n",
    "                tf.constant(\n",
    "                    all_input_ids, shape=[num_examples, seq_length],\n",
    "                    dtype=tf.int32),\n",
    "            \"input_mask\":\n",
    "                tf.constant(\n",
    "                    all_input_mask,\n",
    "                    shape=[num_examples, seq_length],\n",
    "                    dtype=tf.int32),\n",
    "            \"segment_ids\":\n",
    "                tf.constant(\n",
    "                    all_segment_ids,\n",
    "                    shape=[num_examples, seq_length],\n",
    "                    dtype=tf.int32),\n",
    "            \"start_positions\":\n",
    "                tf.constant(\n",
    "                    all_start_positions,\n",
    "                    shape=[num_examples],\n",
    "                    dtype=tf.int32),\n",
    "            \"end_positions\":\n",
    "                tf.constant(\n",
    "                    all_end_positions,\n",
    "                    shape=[num_examples],\n",
    "                    dtype=tf.int32),\n",
    "        }\n",
    "\n",
    "        d = tf.data.Dataset.from_tensor_slices(feature_map)\n",
    "        d = d.repeat()\n",
    "        d = d.batch(batch_size=batch_size, drop_remainder=drop_remainder)\n",
    "        return d\n",
    "\n",
    "    return input_fn"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:37.601666Z",
     "start_time": "2018-11-06T10:11:37.560082Z"
    }
   },
   "outputs": [],
   "source": [
    "def model_fn_builder(bert_config, init_checkpoint, learning_rate,\n",
    "                     num_train_steps, num_warmup_steps, use_tpu,\n",
    "                     use_one_hot_embeddings):\n",
    "    \"\"\"Returns `model_fn` closure for TPUEstimator.\"\"\"\n",
    "\n",
    "    def model_fn(features, labels, mode, params):  # pylint: disable=unused-argument\n",
    "        \"\"\"The `model_fn` for TPUEstimator.\"\"\"\n",
    "\n",
    "        tf.logging.info(\"*** Features ***\")\n",
    "        for name in sorted(features.keys()):\n",
    "            tf.logging.info(\"  name = %s, shape = %s\" % (name, features[name].shape))\n",
    "\n",
    "        unique_ids = features[\"unique_ids\"]\n",
    "        input_ids = features[\"input_ids\"]\n",
    "        input_mask = features[\"input_mask\"]\n",
    "        segment_ids = features[\"segment_ids\"]\n",
    "\n",
    "        is_training = (mode == tf.estimator.ModeKeys.TRAIN)\n",
    "\n",
    "        (start_logits, end_logits) = create_model(\n",
    "            bert_config=bert_config,\n",
    "            is_training=is_training,\n",
    "            input_ids=input_ids,\n",
    "            input_mask=input_mask,\n",
    "            segment_ids=segment_ids,\n",
    "            use_one_hot_embeddings=use_one_hot_embeddings)\n",
    "\n",
    "        tvars = tf.trainable_variables()\n",
    "\n",
    "        initialized_variable_names = {}\n",
    "        scaffold_fn = None\n",
    "        if init_checkpoint:\n",
    "            (assignment_map,\n",
    "             initialized_variable_names) = modeling_tensorflow.get_assigment_map_from_checkpoint(\n",
    "                tvars, init_checkpoint)\n",
    "            if use_tpu:\n",
    "\n",
    "                def tpu_scaffold():\n",
    "                    tf.train.init_from_checkpoint(init_checkpoint, assignment_map)\n",
    "                    return tf.train.Scaffold()\n",
    "\n",
    "                scaffold_fn = tpu_scaffold\n",
    "            else:\n",
    "                tf.train.init_from_checkpoint(init_checkpoint, assignment_map)\n",
    "\n",
    "        tf.logging.info(\"**** Trainable Variables ****\")\n",
    "        for var in tvars:\n",
    "            init_string = \"\"\n",
    "            if var.name in initialized_variable_names:\n",
    "                init_string = \", *INIT_FROM_CKPT*\"\n",
    "            tf.logging.info(\"  name = %s, shape = %s%s\", var.name, var.shape,\n",
    "                            init_string)\n",
    "\n",
    "        output_spec = None\n",
    "        if mode == tf.estimator.ModeKeys.TRAIN:\n",
    "            seq_length = modeling_tensorflow.get_shape_list(input_ids)[1]\n",
    "\n",
    "            def compute_loss(logits, positions):\n",
    "                one_hot_positions = tf.one_hot(\n",
    "                    positions, depth=seq_length, dtype=tf.float32)\n",
    "                log_probs = tf.nn.log_softmax(logits, axis=-1)\n",
    "                loss = -tf.reduce_mean(\n",
    "                    tf.reduce_sum(one_hot_positions * log_probs, axis=-1))\n",
    "                return loss\n",
    "\n",
    "            start_positions = features[\"start_positions\"]\n",
    "            end_positions = features[\"end_positions\"]\n",
    "\n",
    "            start_loss = compute_loss(start_logits, start_positions)\n",
    "            end_loss = compute_loss(end_logits, end_positions)\n",
    "\n",
    "            total_loss = (start_loss + end_loss) / 2.0\n",
    "\n",
    "            train_op = optimization.create_optimizer(\n",
    "                total_loss, learning_rate, num_train_steps, num_warmup_steps, use_tpu)\n",
    "\n",
    "            output_spec = tf.contrib.tpu.TPUEstimatorSpec(\n",
    "                mode=mode,\n",
    "                loss=total_loss,\n",
    "                train_op=train_op,\n",
    "                scaffold_fn=scaffold_fn)\n",
    "        elif mode == tf.estimator.ModeKeys.PREDICT:\n",
    "            batch_size = modeling_tensorflow.get_shape_list(start_logits)[0]\n",
    "            seq_length = modeling_tensorflow.get_shape_list(input_ids)[1]\n",
    "\n",
    "            def compute_loss(logits, positions):\n",
    "                one_hot_positions = tf.one_hot(\n",
    "                    positions, depth=seq_length, dtype=tf.float32)\n",
    "                log_probs = tf.nn.log_softmax(logits, axis=-1)\n",
    "                loss = -tf.reduce_mean(\n",
    "                    tf.reduce_sum(one_hot_positions * log_probs, axis=-1))\n",
    "                return loss\n",
    "\n",
    "            start_positions = features[\"start_positions\"]\n",
    "            end_positions = features[\"end_positions\"]\n",
    "\n",
    "            start_loss = compute_loss(start_logits, start_positions)\n",
    "            end_loss = compute_loss(end_logits, end_positions)\n",
    "\n",
    "            total_loss = (start_loss + end_loss) / 2.0\n",
    "\n",
    "            predictions = {\n",
    "                \"unique_ids\": unique_ids,\n",
    "                \"start_logits\": start_logits,\n",
    "                \"end_logits\": end_logits,\n",
    "                \"total_loss\": tf.reshape(total_loss, [batch_size, 1]),\n",
    "                \"start_loss\": tf.reshape(start_loss, [batch_size, 1]),\n",
    "                \"end_loss\": tf.reshape(end_loss, [batch_size, 1]),\n",
    "            }\n",
    "            output_spec = tf.contrib.tpu.TPUEstimatorSpec(\n",
    "                mode=mode, predictions=predictions, scaffold_fn=scaffold_fn)\n",
    "        else:\n",
    "            raise ValueError(\n",
    "                \"Only TRAIN and PREDICT modes are supported: %s\" % (mode))\n",
    "\n",
    "        return output_spec\n",
    "\n",
    "    return model_fn"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:41.104542Z",
     "start_time": "2018-11-06T10:11:37.603474Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "WARNING:tensorflow:Estimator's model_fn (<function model_fn_builder.<locals>.model_fn at 0x120df3f28>) includes params argument, but params are not passed to Estimator.\n",
      "INFO:tensorflow:Using config: {'_model_dir': '/tmp/squad_base/', '_tf_random_seed': None, '_save_summary_steps': 100, '_save_checkpoints_steps': 1000, '_save_checkpoints_secs': None, '_session_config': allow_soft_placement: true\n",
      "graph_options {\n",
      "  rewrite_options {\n",
      "    meta_optimizer_iterations: ONE\n",
      "  }\n",
      "}\n",
      ", '_keep_checkpoint_max': 5, '_keep_checkpoint_every_n_hours': 10000, '_log_step_count_steps': None, '_train_distribute': None, '_device_fn': None, '_protocol': None, '_eval_distribute': None, '_experimental_distribute': None, '_service': None, '_cluster_spec': <tensorflow.python.training.server_lib.ClusterSpec object at 0x11fd09630>, '_task_type': 'worker', '_task_id': 0, '_global_id_in_cluster': 0, '_master': '', '_evaluation_master': '', '_is_chief': True, '_num_ps_replicas': 0, '_num_worker_replicas': 1, '_tpu_config': TPUConfig(iterations_per_loop=1000, num_shards=8, num_cores_per_replica=None, per_host_input_for_training=3, tpu_job_name=None, initial_infeed_sleep_secs=None, input_partition_dims=None), '_cluster': None}\n",
      "INFO:tensorflow:_TPUContext: eval_on_tpu True\n",
      "WARNING:tensorflow:eval_on_tpu ignored because use_tpu is False.\n"
     ]
    }
   ],
   "source": [
    "is_per_host = tf.contrib.tpu.InputPipelineConfig.PER_HOST_V2\n",
    "run_config = tf.contrib.tpu.RunConfig(\n",
    "    cluster=None,\n",
    "    master=None,\n",
    "    model_dir=output_dir,\n",
    "    save_checkpoints_steps=1000,\n",
    "    tpu_config=tf.contrib.tpu.TPUConfig(\n",
    "        iterations_per_loop=1000,\n",
    "        num_shards=8,\n",
    "        per_host_input_for_training=is_per_host))\n",
    "\n",
    "model_fn = model_fn_builder(\n",
    "    bert_config=bert_config,\n",
    "    init_checkpoint=init_checkpoint,\n",
    "    learning_rate=learning_rate,\n",
    "    num_train_steps=None,\n",
    "    num_warmup_steps=None,\n",
    "    use_tpu=False,\n",
    "    use_one_hot_embeddings=False)\n",
    "\n",
    "estimator = tf.contrib.tpu.TPUEstimator(\n",
    "    use_tpu=False,\n",
    "    model_fn=model_fn,\n",
    "    config=run_config,\n",
    "    train_batch_size=12,\n",
    "    predict_batch_size=1)\n",
    "\n",
    "predict_input_fn = input_fn_builder(\n",
    "    features=eval_features,\n",
    "    seq_length=max_seq_length,\n",
    "    drop_remainder=True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:47.857601Z",
     "start_time": "2018-11-06T10:11:41.106219Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "INFO:tensorflow:Could not find trained model in model_dir: /tmp/squad_base/, running initialization to predict.\n",
      "INFO:tensorflow:Calling model_fn.\n",
      "INFO:tensorflow:Running infer on CPU\n",
      "INFO:tensorflow:*** Features ***\n",
      "INFO:tensorflow:  name = end_positions, shape = (1,)\n",
      "INFO:tensorflow:  name = input_ids, shape = (1, 384)\n",
      "INFO:tensorflow:  name = input_mask, shape = (1, 384)\n",
      "INFO:tensorflow:  name = segment_ids, shape = (1, 384)\n",
      "INFO:tensorflow:  name = start_positions, shape = (1,)\n",
      "INFO:tensorflow:  name = unique_ids, shape = (1,)\n",
      "INFO:tensorflow:**** Trainable Variables ****\n",
      "INFO:tensorflow:  name = bert/embeddings/word_embeddings:0, shape = (30522, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/embeddings/token_type_embeddings:0, shape = (2, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/embeddings/position_embeddings:0, shape = (512, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/embeddings/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/embeddings/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_0/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_1/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_2/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_3/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_4/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_5/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_6/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_7/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "INFO:tensorflow:  name = bert/encoder/layer_8/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_8/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_9/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_10/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/self/query/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/self/query/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/self/key/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/self/key/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/self/value/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/self/value/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/output/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/attention/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/intermediate/dense/kernel:0, shape = (768, 3072), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/intermediate/dense/bias:0, shape = (3072,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/output/dense/kernel:0, shape = (3072, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/output/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/output/LayerNorm/beta:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/encoder/layer_11/output/LayerNorm/gamma:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/pooler/dense/kernel:0, shape = (768, 768), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = bert/pooler/dense/bias:0, shape = (768,), *INIT_FROM_CKPT*\n",
      "INFO:tensorflow:  name = cls/squad/output_weights:0, shape = (2, 768)\n",
      "INFO:tensorflow:  name = cls/squad/output_bias:0, shape = (2,)\n",
      "INFO:tensorflow:Done calling model_fn.\n",
      "INFO:tensorflow:Graph was finalized.\n",
      "INFO:tensorflow:Running local_init_op.\n",
      "INFO:tensorflow:Done running local_init_op.\n",
      "INFO:tensorflow:prediction_loop marked as finished\n"
     ]
    }
   ],
   "source": [
    "tensorflow_all_out = []\n",
    "tensorflow_all_results = []\n",
    "for result in estimator.predict(predict_input_fn, yield_single_examples=True):\n",
    "    unique_id = int(result[\"unique_ids\"])\n",
    "    eval_feature = eval_unique_id_to_feature[unique_id]\n",
    "    start_logits = result[\"start_logits\"]\n",
    "    end_logits = result[\"end_logits\"]\n",
    "    total_loss = result[\"total_loss\"]\n",
    "    start_loss = result[\"start_loss\"]\n",
    "    end_loss = result[\"end_loss\"]\n",
    "\n",
    "    output_json = collections.OrderedDict()\n",
    "    output_json[\"linex_index\"] = unique_id\n",
    "    output_json[\"tokens\"] = [token for (i, token) in enumerate(eval_feature.tokens)]\n",
    "    output_json[\"start_logits\"] = [round(float(x), 6) for x in start_logits.flat]\n",
    "    output_json[\"end_logits\"] = [round(float(x), 6) for x in end_logits.flat]\n",
    "    output_json[\"total_loss\"] = [round(float(x), 6) for x in total_loss.flat]\n",
    "    output_json[\"start_loss\"] = [round(float(x), 6) for x in start_loss.flat]\n",
    "    output_json[\"end_loss\"] = [round(float(x), 6) for x in end_loss.flat]\n",
    "    tensorflow_all_out.append(output_json)\n",
    "    tensorflow_all_results.append(RawResult(\n",
    "                                    unique_id=unique_id,\n",
    "                                    start_logits=start_logits,\n",
    "                                    end_logits=end_logits))\n",
    "    break"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:47.912836Z",
     "start_time": "2018-11-06T10:11:47.859679Z"
    },
    "code_folding": []
   },
   "outputs": [],
   "source": [
    "def _get_best_indexes(logits, n_best_size):\n",
    "    \"\"\"Get the n-best logits from a list.\"\"\"\n",
    "    index_and_score = sorted(enumerate(logits), key=lambda x: x[1], reverse=True)\n",
    "\n",
    "    best_indexes = []\n",
    "    for i in range(len(index_and_score)):\n",
    "        if i >= n_best_size:\n",
    "            break\n",
    "        best_indexes.append(index_and_score[i][0])\n",
    "    return best_indexes\n",
    "\n",
    "def _compute_softmax(scores):\n",
    "    \"\"\"Compute softmax probability over raw logits.\"\"\"\n",
    "    if not scores:\n",
    "        return []\n",
    "\n",
    "    max_score = None\n",
    "    for score in scores:\n",
    "        if max_score is None or score > max_score:\n",
    "            max_score = score\n",
    "\n",
    "    exp_scores = []\n",
    "    total_sum = 0.0\n",
    "    for score in scores:\n",
    "        x = math.exp(score - max_score)\n",
    "        exp_scores.append(x)\n",
    "        total_sum += x\n",
    "\n",
    "    probs = []\n",
    "    for score in exp_scores:\n",
    "        probs.append(score / total_sum)\n",
    "    return probs\n",
    "\n",
    "\n",
    "def compute_predictions(all_examples, all_features, all_results, n_best_size,\n",
    "                      max_answer_length, do_lower_case):\n",
    "    \"\"\"Compute final predictions.\"\"\"\n",
    "    example_index_to_features = collections.defaultdict(list)\n",
    "    for feature in all_features:\n",
    "        example_index_to_features[feature.example_index].append(feature)\n",
    "\n",
    "    unique_id_to_result = {}\n",
    "    for result in all_results:\n",
    "        unique_id_to_result[result.unique_id] = result\n",
    "\n",
    "    _PrelimPrediction = collections.namedtuple(  # pylint: disable=invalid-name\n",
    "        \"PrelimPrediction\",\n",
    "        [\"feature_index\", \"start_index\", \"end_index\", \"start_logit\", \"end_logit\"])\n",
    "\n",
    "    all_predictions = collections.OrderedDict()\n",
    "    all_nbest_json = collections.OrderedDict()\n",
    "    for (example_index, example) in enumerate(all_examples):\n",
    "        features = example_index_to_features[example_index]\n",
    "\n",
    "        prelim_predictions = []\n",
    "        for (feature_index, feature) in enumerate(features):\n",
    "            result = unique_id_to_result[feature.unique_id]\n",
    "\n",
    "            start_indexes = _get_best_indexes(result.start_logits, n_best_size)\n",
    "            end_indexes = _get_best_indexes(result.end_logits, n_best_size)\n",
    "            for start_index in start_indexes:\n",
    "                for end_index in end_indexes:\n",
    "                    # We could hypothetically create invalid predictions, e.g., predict\n",
    "                    # that the start of the span is in the question. We throw out all\n",
    "                    # invalid predictions.\n",
    "                    if start_index >= len(feature.tokens):\n",
    "                        continue\n",
    "                    if end_index >= len(feature.tokens):\n",
    "                        continue\n",
    "                    if start_index not in feature.token_to_orig_map:\n",
    "                        continue\n",
    "                    if end_index not in feature.token_to_orig_map:\n",
    "                        continue\n",
    "                    if not feature.token_is_max_context.get(start_index, False):\n",
    "                        continue\n",
    "                    if end_index < start_index:\n",
    "                        continue\n",
    "                    length = end_index - start_index + 1\n",
    "                    if length > max_answer_length:\n",
    "                        continue\n",
    "                    prelim_predictions.append(\n",
    "                        _PrelimPrediction(\n",
    "                            feature_index=feature_index,\n",
    "                            start_index=start_index,\n",
    "                            end_index=end_index,\n",
    "                            start_logit=result.start_logits[start_index],\n",
    "                            end_logit=result.end_logits[end_index]))\n",
    "\n",
    "        prelim_predictions = sorted(\n",
    "            prelim_predictions,\n",
    "            key=lambda x: (x.start_logit + x.end_logit),\n",
    "            reverse=True)\n",
    "\n",
    "        _NbestPrediction = collections.namedtuple(  # pylint: disable=invalid-name\n",
    "            \"NbestPrediction\", [\"text\", \"start_logit\", \"end_logit\"])\n",
    "\n",
    "        seen_predictions = {}\n",
    "        nbest = []\n",
    "        for pred in prelim_predictions:\n",
    "            if len(nbest) >= n_best_size:\n",
    "                break\n",
    "            feature = features[pred.feature_index]\n",
    "\n",
    "            tok_tokens = feature.tokens[pred.start_index:(pred.end_index + 1)]\n",
    "            orig_doc_start = feature.token_to_orig_map[pred.start_index]\n",
    "            orig_doc_end = feature.token_to_orig_map[pred.end_index]\n",
    "            orig_tokens = example.doc_tokens[orig_doc_start:(orig_doc_end + 1)]\n",
    "            tok_text = \" \".join(tok_tokens)\n",
    "\n",
    "            # De-tokenize WordPieces that have been split off.\n",
    "            tok_text = tok_text.replace(\" ##\", \"\")\n",
    "            tok_text = tok_text.replace(\"##\", \"\")\n",
    "\n",
    "            # Clean whitespace\n",
    "            tok_text = tok_text.strip()\n",
    "            tok_text = \" \".join(tok_text.split())\n",
    "            orig_text = \" \".join(orig_tokens)\n",
    "\n",
    "            final_text = get_final_text(tok_text, orig_text, do_lower_case)\n",
    "            if final_text in seen_predictions:\n",
    "                continue\n",
    "\n",
    "            seen_predictions[final_text] = True\n",
    "            nbest.append(\n",
    "                _NbestPrediction(\n",
    "                    text=final_text,\n",
    "                    start_logit=pred.start_logit,\n",
    "                    end_logit=pred.end_logit))\n",
    "\n",
    "        # In very rare edge cases we could have no valid predictions. So we\n",
    "        # just create a nonce prediction in this case to avoid failure.\n",
    "        if not nbest:\n",
    "            nbest.append(\n",
    "                _NbestPrediction(text=\"empty\", start_logit=0.0, end_logit=0.0))\n",
    "\n",
    "        assert len(nbest) >= 1\n",
    "\n",
    "        total_scores = []\n",
    "        for entry in nbest:\n",
    "            total_scores.append(entry.start_logit + entry.end_logit)\n",
    "\n",
    "        probs = _compute_softmax(total_scores)\n",
    "\n",
    "        nbest_json = []\n",
    "        for (i, entry) in enumerate(nbest):\n",
    "            output = collections.OrderedDict()\n",
    "            output[\"text\"] = entry.text\n",
    "            output[\"probability\"] = probs[i]\n",
    "            output[\"start_logit\"] = entry.start_logit\n",
    "            output[\"end_logit\"] = entry.end_logit\n",
    "            nbest_json.append(output)\n",
    "\n",
    "        assert len(nbest_json) >= 1\n",
    "\n",
    "        all_predictions[example.qas_id] = nbest_json[0][\"text\"]\n",
    "        all_nbest_json[example.qas_id] = nbest_json\n",
    "\n",
    "    return all_predictions, all_nbest_json"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:47.953205Z",
     "start_time": "2018-11-06T10:11:47.914751Z"
    }
   },
   "outputs": [],
   "source": [
    "all_predictions, all_nbest_json = compute_predictions(eval_examples[:1], eval_features[:1], tensorflow_all_results, 20, max_answer_length, True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:47.994647Z",
     "start_time": "2018-11-06T10:11:47.955015Z"
    }
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "OrderedDict([('5733be284776f41900661182',\n",
       "              [OrderedDict([('text', 'empty'),\n",
       "                            ('probability', 1.0),\n",
       "                            ('start_logit', 0.0),\n",
       "                            ('end_logit', 0.0)])])])"
      ]
     },
     "execution_count": 12,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "all_nbest_json"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:48.028473Z",
     "start_time": "2018-11-06T10:11:47.996311Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "1\n",
      "7\n",
      "odict_keys(['linex_index', 'tokens', 'start_logits', 'end_logits', 'total_loss', 'start_loss', 'end_loss'])\n",
      "number of tokens 176\n",
      "number of start_logits 384\n",
      "shape of end_logits 384\n"
     ]
    }
   ],
   "source": [
    "print(len(tensorflow_all_out))\n",
    "print(len(tensorflow_all_out[0]))\n",
    "print(tensorflow_all_out[0].keys())\n",
    "print(\"number of tokens\", len(tensorflow_all_out[0]['tokens']))\n",
    "print(\"number of start_logits\", len(tensorflow_all_out[0]['start_logits']))\n",
    "print(\"shape of end_logits\", len(tensorflow_all_out[0]['end_logits']))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:48.060658Z",
     "start_time": "2018-11-06T10:11:48.030289Z"
    }
   },
   "outputs": [],
   "source": [
    "tensorflow_outputs = [tensorflow_all_out[0]['start_logits'], tensorflow_all_out[0]['end_logits'],\n",
    "                     tensorflow_all_out[0]['total_loss'], tensorflow_all_out[0]['start_loss'],\n",
    "                     tensorflow_all_out[0]['end_loss']]"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## 2/ PyTorch code"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:48.478814Z",
     "start_time": "2018-11-06T10:11:48.062585Z"
    }
   },
   "outputs": [],
   "source": [
    "import modeling\n",
    "from run_squad import *"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:48.512607Z",
     "start_time": "2018-11-06T10:11:48.480729Z"
    }
   },
   "outputs": [],
   "source": [
    "init_checkpoint_pt = \"../google_models/uncased_L-12_H-768_A-12/pytorch_model.bin\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:51.023405Z",
     "start_time": "2018-11-06T10:11:48.514306Z"
    },
    "scrolled": true
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "tensor([0., 0.])"
      ]
     },
     "execution_count": 17,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "device = torch.device(\"cpu\")\n",
    "model = modeling.BertForQuestionAnswering(bert_config)\n",
    "model.bert.load_state_dict(torch.load(init_checkpoint_pt, map_location='cpu'))\n",
    "model.to(device)\n",
    "model.qa_outputs.weight.data.fill_(1.0)\n",
    "model.qa_outputs.bias.data.zero_()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:51.079364Z",
     "start_time": "2018-11-06T10:11:51.028228Z"
    },
    "code_folding": []
   },
   "outputs": [],
   "source": [
    "all_input_ids = torch.tensor([f.input_ids for f in eval_features], dtype=torch.long)\n",
    "all_input_mask = torch.tensor([f.input_mask for f in eval_features], dtype=torch.long)\n",
    "all_segment_ids = torch.tensor([f.segment_ids for f in eval_features], dtype=torch.long)\n",
    "all_example_index = torch.arange(all_input_ids.size(0), dtype=torch.long)\n",
    "all_start_positions = torch.tensor([[f.start_position] for f in eval_features], dtype=torch.long)\n",
    "all_end_positions = torch.tensor([[f.end_position] for f in eval_features], dtype=torch.long)\n",
    "\n",
    "eval_data = TensorDataset(all_input_ids, all_input_mask, all_segment_ids,\n",
    "                                   all_start_positions, all_end_positions, all_example_index)\n",
    "eval_sampler = SequentialSampler(eval_data)\n",
    "eval_dataloader = DataLoader(eval_data, sampler=eval_sampler, batch_size=1)\n",
    "\n",
    "model.eval()\n",
    "None"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:51.114686Z",
     "start_time": "2018-11-06T10:11:51.081474Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "[torch.Size([1, 384]), torch.Size([1, 384]), torch.Size([1, 384]), torch.Size([1, 1]), torch.Size([1, 1]), torch.Size([1])]\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "torch.Size([1, 1])"
      ]
     },
     "execution_count": 19,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "batch = iter(eval_dataloader).next()\n",
    "input_ids, input_mask, segment_ids, start_positions, end_positions, example_index = batch\n",
    "print([t.shape for t in batch])\n",
    "start_positions.size()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:52.298367Z",
     "start_time": "2018-11-06T10:11:51.116219Z"
    }
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Evaluating:   0%|          | 0/270 [00:00<?, ?it/s]\n"
     ]
    }
   ],
   "source": [
    "pytorch_all_out = []\n",
    "for batch in tqdm(eval_dataloader, desc=\"Evaluating\"):\n",
    "    input_ids, input_mask, segment_ids, start_positions, end_positions, example_index = batch\n",
    "    input_ids = input_ids.to(device)\n",
    "    input_mask = input_mask.to(device)\n",
    "    segment_ids = segment_ids.to(device)\n",
    "    start_positions = start_positions.to(device)\n",
    "    end_positions = end_positions.to(device)\n",
    "\n",
    "    total_loss, (start_logits, end_logits) = model(input_ids, segment_ids, input_mask, start_positions, end_positions)\n",
    "    \n",
    "    eval_feature = eval_features[example_index.item()]\n",
    "\n",
    "    output_json = collections.OrderedDict()\n",
    "    output_json[\"linex_index\"] = unique_id\n",
    "    output_json[\"tokens\"] = [token for (i, token) in enumerate(eval_feature.tokens)]\n",
    "    output_json[\"total_loss\"] = total_loss.detach().cpu().numpy()\n",
    "    output_json[\"start_logits\"] = start_logits.detach().cpu().numpy()\n",
    "    output_json[\"end_logits\"] = end_logits.detach().cpu().numpy()\n",
    "    pytorch_all_out.append(output_json)\n",
    "    break"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:52.339553Z",
     "start_time": "2018-11-06T10:11:52.300335Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "1\n",
      "5\n",
      "odict_keys(['linex_index', 'tokens', 'total_loss', 'start_logits', 'end_logits'])\n",
      "number of tokens 176\n",
      "number of start_logits 1\n",
      "number of end_logits 1\n"
     ]
    }
   ],
   "source": [
    "print(len(pytorch_all_out))\n",
    "print(len(pytorch_all_out[0]))\n",
    "print(pytorch_all_out[0].keys())\n",
    "print(\"number of tokens\", len(pytorch_all_out[0]['tokens']))\n",
    "print(\"number of start_logits\", len(pytorch_all_out[0]['start_logits']))\n",
    "print(\"number of end_logits\", len(pytorch_all_out[0]['end_logits']))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:52.372827Z",
     "start_time": "2018-11-06T10:11:52.341393Z"
    }
   },
   "outputs": [],
   "source": [
    "pytorch_outputs = [pytorch_all_out[0]['start_logits'], pytorch_all_out[0]['end_logits'], pytorch_all_out[0]['total_loss']]"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## 3/ Comparing the standard deviation of start_logits, end_logits and loss of both models"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:52.402814Z",
     "start_time": "2018-11-06T10:11:52.374329Z"
    }
   },
   "outputs": [],
   "source": [
    "import numpy as np"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:11:52.434743Z",
     "start_time": "2018-11-06T10:11:52.404345Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "shape tensorflow layer, shape pytorch layer, standard deviation\n",
      "((384,), (1, 384), 5.244962470555037e-06)\n",
      "((384,), (1, 384), 5.244962470555037e-06)\n",
      "((1,), (), 4.560241698925438e-06)\n"
     ]
    }
   ],
   "source": [
    "print('shape tensorflow layer, shape pytorch layer, standard deviation')\n",
    "print('\\n'.join(list(str((np.array(tensorflow_outputs[i]).shape,\n",
    "                          np.array(pytorch_outputs[i]).shape, \n",
    "                          np.sqrt(np.mean((np.array(tensorflow_outputs[i]) - np.array(pytorch_outputs[i]))**2.0)))) for i in range(3))))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {
    "ExecuteTime": {
     "end_time": "2018-11-06T10:12:54.200059Z",
     "start_time": "2018-11-06T10:12:54.167355Z"
    }
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Total loss of the TF model 9.06024 - Total loss of the PT model 9.0602445602417\n"
     ]
    }
   ],
   "source": [
    "print(\"Total loss of the TF model {} - Total loss of the PT model {}\".format(tensorflow_outputs[2][0], pytorch_outputs[2]))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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