Notebooks/4_High_Energy_sources__Multi_instrument_multi_wavelength_exploration_using_VO_tools.ipynb

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    "# Multi-instrument, multi-wavelength study of high energy sources with the Virtual Observatory\n",
    "\n",
    "François Bonnarel¹, Caroline Bot¹, Françoise Genova¹, René Goosmann¹, Manon Marchand¹, Ada Nebot¹.\n",
    "\n",
    "1. Université de Strasbourg, CNRS, Observatoire Astronomique de Strasbourg, UMR 7550, F-67000, Strasbourg, France\n",
    "\n",
    "This Notebook is based on the Euro-VO \"Multi-instrument, multi-wavelength study of high energy sources with the Virtual Observatory\" tutorial http://www.euro-vo.org/sites/default/files/documents/tutorial-highenergy_2016Nov.pdf. \n",
    "\n",
    "Developed by Caroline Bot, François Bonnarel, René Goosmann and Françoise Genova. \n",
    "Adapted to a Jupyter Notebook by Ada Nebot. \n",
    "\n",
    "![CDS](Data/images/cds.png)\n",
    "\n",
    "***\n",
    "\n",
    "## Introduction\n",
    "\n",
    "This tutorial demonstrates how to use several standard tools of the Virtual Observatory (VO) for data mining and multiple waveband data analysis. The step-by-step application below focuses on applications in the gamma-ray and high energy domain, but also involves observational data from other wavebands. The user may explore how to:\n",
    "\n",
    "1. query astronomical catalogues in the gamma-ray and high energy spectral band using VO tools\n",
    "2. cross-correlate catalogues to find an object at different photon energy bands\n",
    "3. apply selection criteria when extracting sources from a catalogue\n",
    "4. use the observational measures of the selected objects to explore possible correlations\n",
    "5. visualize astronomical images from the radio up to the high energy domain\n",
    "6. display spectral energy distributions obtained from different photometric data sets\n",
    "   \n",
    "Schematic view of the scientific rationale of the tutorial: \n",
    "\n",
    "![schema](Data/images/schema.png)"
   ]
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   "source": [
    "# Standard Library\n",
    "import pickle\n",
    "from pathlib import Path\n",
    "\n",
    "# Astronomy tools\n",
    "from astropy import units as u\n",
    "from astropy.coordinates import SkyCoord\n",
    "from astropy.table import hstack, join, unique, vstack\n",
    "\n",
    "# Access astronomical databases\n",
    "from astroquery.simbad import Simbad\n",
    "from astroquery.vizier import Vizier\n",
    "\n",
    "# Sky visualization\n",
    "from ipyaladin import Aladin\n",
    "\n",
    "# For plots\n",
    "import plotly.express as px"
   ]
  },
  {
   "attachments": {},
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   "source": [
    "## Step #1 - Obtaining all HESS sources from SIMBAD\n",
    "\n",
    "[![Simbad](https://custom-icon-badges.demolab.com/badge/Simbad-gray.svg?logo=simbad&logoColor=lightblue&logoWidth=20)](https://simbad.u-strasbg.fr/simbad/ \"https://simbad.u-strasbg.fr/simbad/\")\n",
    "\n",
    "How to obtain a catalogue of all published HESS sources from the astronomical database SIMBAD.\n",
    "\n",
    "The High Energy Stereoscopic System (HESS) is a Cherenkov telescope array detecting cosmic gamma-rays in the GeV—TeV  range. Sources detected by HESS include supernova remnants (SNR), wind nebulae pulsars, active galactic nuclei (AGN) and others. The number of detected sources steadily grows and makes it possible to study certain sub-samples of the HESS catalogue. In the following, the HESS sources should be investigated with respect to their gamma-ray properties obtained from the second Fermi-LAT catalogue.\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['main_id', 'coordinates']"
      ]
     },
     "execution_count": 2,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Check which are the default fields\n",
    "Simbad.get_votable_fields()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
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     "text": [
      "--NOTES--\n",
      "\n",
      "1. The parameter filtername must correspond to an existing filter. Filters include: B,V,R,I,J,K.  They are checked by SIMBAD but not astroquery.simbad\n",
      "\n",
      "2. Fields beginning with rvz display the data as it is in the database. Fields beginning with rv force the display as a radial velocity. Fields beginning with z force the display as a redshift\n",
      "\n",
      "3. For each measurement catalog, the VOTable contains all fields of the first measurement. When applicable, the first measurement is the mean one. \n",
      "\n",
      "Available VOTABLE fields:\n",
      "\n",
      "bibcodelist(y1-y2)\n",
      "biblio\n",
      "cel\n",
      "cl.g\n",
      "coo(opt)\n",
      "coo_bibcode\n",
      "coo_err_angle\n",
      "coo_err_maja\n",
      "coo_err_mina\n",
      "coo_qual\n",
      "coo_wavelength\n",
      "coordinates\n",
      "dec(opt)\n",
      "dec_prec\n",
      "diameter\n",
      "dim\n",
      "dim_angle\n",
      "dim_bibcode\n",
      "dim_incl\n",
      "dim_majaxis\n",
      "dim_minaxis\n",
      "dim_qual\n",
      "dim_wavelength\n",
      "dimensions\n",
      "distance\n",
      "distance_result\n",
      "einstein\n",
      "fe_h\n",
      "flux(filtername)\n",
      "flux_bibcode(filtername)\n",
      "flux_error(filtername)\n",
      "flux_name(filtername)\n",
      "flux_qual(filtername)\n",
      "flux_system(filtername)\n",
      "flux_unit(filtername)\n",
      "fluxdata(filtername)\n",
      "gcrv\n",
      "gen\n",
      "gj\n",
      "hbet\n",
      "hbet1\n",
      "hgam\n",
      "id(opt)\n",
      "ids\n",
      "iras\n",
      "irc\n",
      "iso\n",
      "iue\n",
      "jp11\n",
      "link_bibcode\n",
      "main_id\n",
      "measurements\n",
      "membership\n",
      "mesplx\n",
      "mespm\n",
      "mk\n",
      "morphtype\n",
      "mt\n",
      "mt_bibcode\n",
      "mt_qual\n",
      "otype\n",
      "otype(opt)\n",
      "otypes\n",
      "parallax\n",
      "plx\n",
      "plx_bibcode\n",
      "plx_error\n",
      "plx_prec\n",
      "plx_qual\n",
      "pm\n",
      "pm_bibcode\n",
      "pm_err_angle\n",
      "pm_err_maja\n",
      "pm_err_mina\n",
      "pm_qual\n",
      "pmdec\n",
      "pmdec_prec\n",
      "pmra\n",
      "pmra_prec\n",
      "pos\n",
      "posa\n",
      "propermotions\n",
      "ra(opt)\n",
      "ra_prec\n",
      "rot\n",
      "rv_value\n",
      "rvz_bibcode\n",
      "rvz_error\n",
      "rvz_qual\n",
      "rvz_radvel\n",
      "rvz_type\n",
      "rvz_wavelength\n",
      "sao\n",
      "sp\n",
      "sp_bibcode\n",
      "sp_nature\n",
      "sp_qual\n",
      "sptype\n",
      "td1\n",
      "typed_id\n",
      "ubv\n",
      "uvby\n",
      "uvby1\n",
      "v*\n",
      "velocity\n",
      "xmm\n",
      "z_value\n",
      "For more information on a field:\n",
      "Simbad.get_field_description ('field_name') \n",
      "Currently active VOTABLE fields:\n",
      " ['main_id', 'coordinates']\n"
     ]
    }
   ],
   "source": [
    "# Check the available fields in a Simbad astroquery\n",
    "Simbad.list_votable_fields()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "standard name of the object type\n"
     ]
    }
   ],
   "source": [
    "# Get more information about the field coordinatse\n",
    "Simbad.get_field_description(\"otype\")"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "To check all available object types in Simbad go to http://simbad.u-strasbg.fr/simbad/sim-display?data=otypes"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "data": {
      "text/plain": [
       "['main_id', 'coordinates', 'otype', 'ra(d)', 'dec(d)']"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Add the field otype and check that it is now included\n",
    "Simbad.add_votable_fields(\"otype\")\n",
    "# Add new columns with the RA and Dec in degrees\n",
    "# (default cols are h:m:s and d:m:s respectively)\n",
    "Simbad.add_votable_fields(\"ra(d)\")\n",
    "Simbad.add_votable_fields(\"dec(d)\")\n",
    "\n",
    "Simbad.get_votable_fields()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
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   "outputs": [
    {
     "data": {
      "text/html": [
       "<div><i>Table length=113</i>\n",
       "<table id=\"table140190390223200\" class=\"table-striped table-bordered table-condensed\">\n",
       "<thead><tr><th>MAIN_ID</th><th>RA</th><th>DEC</th><th>RA_PREC</th><th>DEC_PREC</th><th>COO_ERR_MAJA</th><th>COO_ERR_MINA</th><th>COO_ERR_ANGLE</th><th>COO_QUAL</th><th>COO_WAVELENGTH</th><th>COO_BIBCODE</th><th>OTYPE</th><th>RA_d</th><th>DEC_d</th><th>SCRIPT_NUMBER_ID</th></tr></thead>\n",
       "<thead><tr><th></th><th>&quot;h:m:s&quot;</th><th>&quot;d:m:s&quot;</th><th></th><th></th><th>mas</th><th>mas</th><th>deg</th><th></th><th></th><th></th><th></th><th>deg</th><th>deg</th><th></th></tr></thead>\n",
       "<thead><tr><th>object</th><th>str13</th><th>str13</th><th>int16</th><th>int16</th><th>float32</th><th>float32</th><th>int16</th><th>str1</th><th>str1</th><th>object</th><th>object</th><th>float64</th><th>float64</th><th>int32</th></tr></thead>\n",
       "<tr><td>HESS J0232+202</td><td>02 32 53.2</td><td>+20 16 21</td><td>5</td><td>5</td><td>--</td><td>--</td><td>0</td><td>D</td><td></td><td>2007A&amp;A...475L...9A</td><td>gamma</td><td>38.22170000</td><td>20.27250000</td><td>1</td></tr>\n",
       "<tr><td>HESS J0534+220</td><td>05 34</td><td>+22.0</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td></td><td>2008ApJ...682L..41H</td><td>gamma</td><td>83.50000000</td><td>22.00000000</td><td>1</td></tr>\n",
       "<tr><td>4FGL J0535.2-6736</td><td>05 36 00.01</td><td>-67 35 07.5</td><td>6</td><td>6</td><td>--</td><td>--</td><td>0</td><td>D</td><td>X</td><td>2012ApJ...759..123S</td><td>HighMassXBin</td><td>84.00004000</td><td>-67.58542000</td><td>1</td></tr>\n",
       "<tr><td>HD 259440</td><td>06 32 59.2566</td><td>+05 48 01.160</td><td>14</td><td>14</td><td>0.018</td><td>0.016</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>HighMassXBin</td><td>98.24690253</td><td>5.80032243</td><td>1</td></tr>\n",
       "<tr><td>NAME MONOCEROS NEB</td><td>06 38 43</td><td>+06 30.2</td><td>4</td><td>4</td><td>31000.000</td><td>18000.000</td><td>94</td><td>E</td><td></td><td>1988IRASP.C......0J</td><td>SNRemnant</td><td>99.67900000</td><td>6.50300000</td><td>1</td></tr>\n",
       "<tr><td>NAME Vela X</td><td>08 33 08.880</td><td>-45 11 24.36</td><td>7</td><td>7</td><td>--</td><td>--</td><td>0</td><td>D</td><td></td><td>2015ApJS..217....2M</td><td>Pulsar</td><td>128.28700000</td><td>-45.19010000</td><td>1</td></tr>\n",
       "<tr><td>NAME Vela Jr SN</td><td>08 52.0</td><td>-46 20</td><td>3</td><td>3</td><td>--</td><td>--</td><td>0</td><td>E</td><td>R</td><td>2009BASI...37...45G</td><td>SNRemnant</td><td>133.00000000</td><td>-46.33000000</td><td>1</td></tr>\n",
       "<tr><td>2FGL J1019.0-5856</td><td>10 18 58.0</td><td>-58 56 36</td><td>5</td><td>5</td><td>--</td><td>--</td><td>0</td><td>D</td><td>G</td><td>2020ApJS..247...33A</td><td>HighMassXBin</td><td>154.74170000</td><td>-58.94330000</td><td>1</td></tr>\n",
       "<tr><td>PSR J1016-58</td><td>10 16 21.266</td><td>-58 57 11.70</td><td>7</td><td>7</td><td>1213.000</td><td>710.000</td><td>90</td><td>D</td><td>R</td><td>2015ApJ...814..128K</td><td>Pulsar</td><td>154.08860800</td><td>-58.95325000</td><td>1</td></tr>\n",
       "<tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr>\n",
       "<tr><td>Fermi J1808.2-2029</td><td>18 08 00.0</td><td>-20 24 00</td><td>5</td><td>5</td><td>--</td><td>--</td><td>0</td><td>D</td><td></td><td>2013ApJ...774...74F</td><td>gamma</td><td>272.00000000</td><td>-20.40000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1818-154</td><td>18 16.1</td><td>-15 12</td><td>3</td><td>3</td><td>--</td><td>--</td><td>0</td><td>E</td><td></td><td>2013ApJ...773...77A</td><td>gamma</td><td>274.02000000</td><td>-15.20000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1828-099</td><td>18 28</td><td>-09.9</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td>G</td><td>2017MNRAS.468.2093D</td><td>gamma</td><td>277.00000000</td><td>-9.90000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1832-085</td><td>18 32</td><td>-08.5</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td>G</td><td>2017MNRAS.468.2093D</td><td>gamma</td><td>278.00000000</td><td>-8.50000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1844-030</td><td>18 44 40.0</td><td>-03 06 00</td><td>5</td><td>5</td><td>--</td><td>--</td><td>0</td><td>E</td><td></td><td>2017A&amp;A...602A..31C</td><td>gamma</td><td>281.16670000</td><td>-3.10000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1852-000</td><td>18 52</td><td>+00.0</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td></td><td>2011ApJ...743....4Z</td><td>gamma</td><td>283.00000000</td><td>0.00000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1854+013</td><td>18 54</td><td>+01.3</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td>G</td><td>2021ApJ...917....6A</td><td>gamma</td><td>283.50000000</td><td>1.30000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1915+115</td><td>19 15</td><td>+11.5</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td>G</td><td>2021ApJ...917....6A</td><td>gamma</td><td>288.80000000</td><td>11.50000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1923+140</td><td>19 23</td><td>+14.0</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td>G</td><td>2021ApJ...917....6A</td><td>gamma</td><td>290.80000000</td><td>14.00000000</td><td>1</td></tr>\n",
       "<tr><td>HESS J1943+215</td><td>19 43 00</td><td>+21 31.1</td><td>4</td><td>4</td><td>--</td><td>--</td><td>0</td><td>E</td><td></td><td>2012PASJ...64..100Y</td><td>gamma</td><td>295.75000000</td><td>21.51800000</td><td>1</td></tr>\n",
       "</table></div>"
      ],
      "text/plain": [
       "<Table length=113>\n",
       "     MAIN_ID             RA           DEC      ...    DEC_d     SCRIPT_NUMBER_ID\n",
       "                      \"h:m:s\"       \"d:m:s\"    ...     deg                      \n",
       "      object           str13         str13     ...   float64         int32      \n",
       "------------------ ------------- ------------- ... ------------ ----------------\n",
       "    HESS J0232+202    02 32 53.2     +20 16 21 ...  20.27250000                1\n",
       "    HESS J0534+220         05 34         +22.0 ...  22.00000000                1\n",
       " 4FGL J0535.2-6736   05 36 00.01   -67 35 07.5 ... -67.58542000                1\n",
       "         HD 259440 06 32 59.2566 +05 48 01.160 ...   5.80032243                1\n",
       "NAME MONOCEROS NEB      06 38 43      +06 30.2 ...   6.50300000                1\n",
       "       NAME Vela X  08 33 08.880  -45 11 24.36 ... -45.19010000                1\n",
       "   NAME Vela Jr SN       08 52.0        -46 20 ... -46.33000000                1\n",
       " 2FGL J1019.0-5856    10 18 58.0     -58 56 36 ... -58.94330000                1\n",
       "      PSR J1016-58  10 16 21.266  -58 57 11.70 ... -58.95325000                1\n",
       "               ...           ...           ... ...          ...              ...\n",
       "Fermi J1808.2-2029    18 08 00.0     -20 24 00 ... -20.40000000                1\n",
       "    HESS J1818-154       18 16.1        -15 12 ... -15.20000000                1\n",
       "    HESS J1828-099         18 28         -09.9 ...  -9.90000000                1\n",
       "    HESS J1832-085         18 32         -08.5 ...  -8.50000000                1\n",
       "    HESS J1844-030    18 44 40.0     -03 06 00 ...  -3.10000000                1\n",
       "    HESS J1852-000         18 52         +00.0 ...   0.00000000                1\n",
       "    HESS J1854+013         18 54         +01.3 ...   1.30000000                1\n",
       "    HESS J1915+115         19 15         +11.5 ...  11.50000000                1\n",
       "    HESS J1923+140         19 23         +14.0 ...  14.00000000                1\n",
       "    HESS J1943+215      19 43 00      +21 31.1 ...  21.51800000                1"
      ]
     },
     "execution_count": 6,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Query Simbad by catalog containing the keyword 'hess'\n",
    "# and display the result in pretty notebook format\n",
    "hess_simbad = Simbad.query_catalog(\"hess\")\n",
    "hess_simbad"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'There are 113 HESS sources in Simbad database.'"
      ]
     },
     "execution_count": 7,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "f\"There are {len(hess_simbad)} HESS sources in Simbad database.\""
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Exercise: Do you know how to count how many HESS sources in Simbad are classified as HMXB? And as SNR? (answer in next cell, we use the pandas functionnalities)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "OTYPE\n",
       "BLLac            4\n",
       "Blazar           1\n",
       "HighMassXBin     7\n",
       "LowMassXBin      1\n",
       "Pulsar          21\n",
       "Region           1\n",
       "SNRemnant       16\n",
       "XrayBin          1\n",
       "gamma           61\n",
       "Name: MAIN_ID, dtype: int64"
      ]
     },
     "execution_count": 8,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "df_hess_simbad = hess_simbad.to_pandas()\n",
    "df_hess_simbad.groupby(\"OTYPE\").count()[\"MAIN_ID\"]"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step #2 - Projecting HESS sources onto the Fermi sky\n",
    "\n",
    "[![Aladin](https://custom-icon-badges.demolab.com/badge/Aladin-gray.svg?logo=aladin&logoColor=purple&logoWidth=20)](https://aladin.cds.unistra.fr/aladin.gml \"https://aladin.cds.unistra.fr/aladin.gml\")\n",
    "\n",
    "Display the HESS sources in Galactic coordinates and overlay it on a view of an all-sky image survey conducted with Fermi LAT."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/vnd.jupyter.widget-view+json": {
       "model_id": "affb159c7a5742928b3ad9b5e4bee108",
       "version_major": 2,
       "version_minor": 0
      },
      "text/plain": [
       "Aladin(options=['allow_full_zoomout', 'coo_frame', 'fov', 'full_screen', 'log', 'overlay_survey', 'overlay_sur…"
      ]
     },
     "execution_count": 9,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Display the Fermi color HiPS\n",
    "aladin = Aladin(survey=\"P/Fermi/color\")\n",
    "aladin"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Display the sources on top\n",
    "aladin.add_table(hess_simbad)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Increase height of the widget\n",
    "aladin.height = 600"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "** zoom out and move to see the points **\n",
    "\n",
    "The HESS sources are overlayed on top of the Fermi images. If you don't see them, zoom out and move around the sky to locate them around the Galactic Plane. \n",
    "By selecting a source you will see the main Simbad information of that source at the bottom of the AladinLite widget. You can change the image by selecting the stack layer. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Select the \"SNR\" sources and overlay them\n",
    "# Note that characters in python need that extra \"b\"\n",
    "idx_SNR = hess_simbad[\"OTYPE\"] == [\"SNRemnant\"]\n",
    "aladin.add_table(hess_simbad[idx_SNR])"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step #3 - Cross-identify HESS and Fermi LAT sources\n",
    "\n",
    "\n",
    "[![Xmatch](https://custom-icon-badges.demolab.com/badge/Xmatch-gray.svg?logo=xmatch&logoColor=blue&logoWidth=20)](http://cdsxmatch.u-strasbg.fr/ \"http://cdsxmatch.u-strasbg.fr/\")\n",
    "\n",
    "Here we will cross-correlate the HESS source list with the complete set of objects appearing in the *3rd Fermi LAT catalogue*. \n",
    "\n",
    "Then we use the CDS XMatch service (http://cdsxmatch.u-strasbg.fr/) via the astroquery.XMatch.query module to look for spatial crossmatches\n",
    "\n",
    "The cross-correlation will create a new, sub-catalogue of all HESS sources found in Simbad that also appear in the 3rd Fermi-LAT catalogue. \n",
    "\n",
    "The Fermi Gamma Ray Space Telescope was launched in 2008 and observes astronomical objects across the 10 keV – 300 GeV band. The main instrument of the Fermi satellite is the Large Area Telescope (LAT), an imaging high-energy gamma-ray telescope covering the spectral range of 20 MeV – 300 GeV. The LAT has a very wide field of view, covering 20% of the sky at any time and scanning the complete sky every three hours. In the third Fermi-LAT catalogue (3FGL) all identified Fermi sources after 4 years of continuous survey were published together with basic measurements such as photometric fluxes in different spectral bands, an estimated gamma-ray spectral slope, or a variability flag.\n",
    "\n",
    "In the following cross-identification process, it is assumed that the HESS source and its Fermi counterpart have an apparent angular distance of less then 1°, which is guided by the average angular resolution of the Fermi-LAT across the gamma-ray waveband. The angular resolution of the Fermi-LAT drops from 3° at 100 MeV to 0.04° at 100 GeV. Choosing a different limit for the angular distance thus favors associations with more objects at the low or at the high energy end of the Fermi-LAT band."
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Find the VizieR name of the 3rd Fermi LAT catalogue. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "J/ApJS/218/23 :  Fermi LAT third source catalog (3FGL) (Acero+, 2015)\n",
      "J/ApJS/232/18 :  The third Fermi-LAT >10GeV catalog (3FHL) (Ajello+, 2017)\n",
      "J/MNRAS/462/3180 :  3FGL Blazar of Unknown Type classification (Chiaro+, 2016)\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "WARNING: UnitsWarning: The unit 'ph' has been deprecated in the VOUnit standard. [astropy.units.format.utils]\n"
     ]
    }
   ],
   "source": [
    "catalog_list = Vizier.find_catalogs(\"Fermi LAT third catalog\")\n",
    "for k, v in catalog_list.items():\n",
    "    print(k, \": \", v.description)"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Check the list of cadidate catalogs and select the one that interests us, i.e. \"Fermi LAT third source catalog (3FGL) (Acero+, 2015)\". It's identifier is: **J/ApJS/218/23**. VizieR might have several tables associated to this catalog. \n",
    "The next step is to see if the catalog has more than one table associated. \n",
    "We display table names and metadata:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "TableList with 3 tables:\n",
      "\t'0:J/ApJS/218/23/table4' with 19 column(s) and 4984 row(s) \n",
      "\t'1:J/ApJS/218/23/table8' with 13 column(s) and 3034 row(s) \n",
      "\t'2:J/ApJS/218/23/table3' with 2 column(s) and 12 row(s) \n",
      "Metadata of each table: \n",
      "{'ID': 'J_ApJS_218_23_table4', 'name': 'J/ApJS/218/23/table4', 'description': 'LAT 4-year catalog (3034 unique 3FGL sources)'}\n"
     ]
    }
   ],
   "source": [
    "# these two lines are commented out to prevent this pretty large catalog to be queried a lot of times.\n",
    "# They should be executed the first time you do the tutorial to store the result in a pickle file.\n",
    "\n",
    "# Vizier.ROW_LIMIT = -1\n",
    "# catalog = Vizier.get_catalogs(\"J/ApJS/218/23\")\n",
    "# with open(Path.cwd() / \"Data\" / \"J_ApJS_218_23\" / \"J_ApJS_218_23.pkl\", \"wb\") as file:\n",
    "#     catalog2 = pickle.dump(catalog, file)\n",
    "\n",
    "# Here we just get the catalog from the file system.\n",
    "\n",
    "with Path.open(\n",
    "    Path.cwd() / \"Data\" / \"J_ApJS_218_23\" / \"J_ApJS_218_23.pkl\",\n",
    "    \"rb\",\n",
    ") as file:\n",
    "    catalog = pickle.load(file)  # noqa: S301\n",
    "\n",
    "print(catalog)\n",
    "print(\"Metadata of each table: \")\n",
    "print(catalog[0].meta)"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "There are three tables, each with a different number of columns and rows. To see what could be of interest, let's display their description."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 15,
   "metadata": {
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "J/ApJS/218/23/table4 :  LAT 4-year catalog (3034 unique 3FGL sources)\n",
      "J/ApJS/218/23/table8 :  LAT 4-year catalog: spectral information\n",
      "J/ApJS/218/23/table3 :  Definitions of the analysis flags\n"
     ]
    }
   ],
   "source": [
    "for i in range(len(catalog)):\n",
    "    print(catalog[i].meta[\"name\"], \": \", catalog[i].meta[\"description\"])"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "We can even visualise the first element of each table to have an idea of their content. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<i>Row index=0</i>\n",
       "<table id=\"table140190390230544\">\n",
       "<thead><tr><th>_3FGL</th><th>Na</th><th>RAJ2000</th><th>DEJ2000</th><th>amaj</th><th>amin</th><th>phi</th><th>Sig</th><th>F35</th><th>S25</th><th>Gamma</th><th>Mod</th><th>Var</th><th>Flag</th><th>Assoc</th><th>TeV</th><th>Class</th><th>ID</th><th>Simbad</th></tr></thead>\n",
       "<thead><tr><th></th><th></th><th>deg</th><th>deg</th><th>deg</th><th>deg</th><th>deg</th><th></th><th>1e-05 / (s m2)</th><th>fW / m2</th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th></tr></thead>\n",
       "<thead><tr><th>str13</th><th>int16</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>int16</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>str2</th><th>str1</th><th>str12</th><th>str18</th><th>str1</th><th>str5</th><th>str26</th><th>str6</th></tr></thead>\n",
       "<tr><td>J0000.1+6545</td><td>1</td><td>0.038</td><td>65.752</td><td>0.102</td><td>0.078</td><td>41</td><td>6.8</td><td>1.0</td><td>13.6</td><td>2.41</td><td>PL</td><td></td><td>3</td><td>2FGL J2359.6+6543c</td><td></td><td></td><td></td><td>Simbad</td></tr>\n",
       "</table>"
      ],
      "text/plain": [
       "<Row index=0>\n",
       "   _3FGL       Na  RAJ2000 DEJ2000   amaj    amin   phi    Sig        F35         S25    Gamma  Mod  Var   Flag       Assoc        TeV  Class   ID  Simbad\n",
       "                     deg     deg     deg     deg    deg          1e-05 / (s m2) fW / m2                                                                   \n",
       "   str13     int16 float32 float32 float32 float32 int16 float32    float32     float32 float32 str2 str1 str12       str18        str1  str5 str26  str6 \n",
       "------------ ----- ------- ------- ------- ------- ----- ------- -------------- ------- ------- ---- ---- ----- ------------------ ---- ----- ----- ------\n",
       "J0000.1+6545     1   0.038  65.752   0.102   0.078    41     6.8            1.0    13.6    2.41   PL          3 2FGL J2359.6+6543c                  Simbad"
      ]
     },
     "execution_count": 16,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "table0 = catalog[0]\n",
    "table0[0]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<i>Row index=0</i>\n",
       "<table id=\"table140189331288800\">\n",
       "<thead><tr><th>File</th><th>_3FGL</th><th>LC</th><th>F1</th><th>E_F1</th><th>F2</th><th>E_F2</th><th>F3</th><th>E_F3</th><th>F4</th><th>E_F4</th><th>F5</th><th>E_F5</th></tr></thead>\n",
       "<thead><tr><th></th><th></th><th></th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>1e-05 / (s m2)</th><th>1e-05 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th></tr></thead>\n",
       "<thead><tr><th>str13</th><th>str13</th><th>str2</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th></tr></thead>\n",
       "<tr><td>J0000.1p6545</td><td>J0000.1+6545</td><td>LC</td><td>1.81</td><td>0.82</td><td>0.69</td><td>0.14</td><td>1.24</td><td>0.23</td><td>0.58</td><td>0.49</td><td>0.28</td><td>0.19</td></tr>\n",
       "</table>"
      ],
      "text/plain": [
       "<Row index=0>\n",
       "    File        _3FGL      LC         F1             E_F1             F2             E_F2            F3            E_F3            F4            E_F4            F5            E_F5     \n",
       "                               0.0001 / (s m2) 0.0001 / (s m2) 0.0001 / (s m2) 0.0001 / (s m2) 1e-05 / (s m2) 1e-05 / (s m2) 1e-06 / (s m2) 1e-06 / (s m2) 1e-06 / (s m2) 1e-06 / (s m2)\n",
       "   str13        str13     str2     float32         float32         float32         float32        float32        float32        float32        float32        float32        float32    \n",
       "------------ ------------ ---- --------------- --------------- --------------- --------------- -------------- -------------- -------------- -------------- -------------- --------------\n",
       "J0000.1p6545 J0000.1+6545   LC            1.81            0.82            0.69            0.14           1.24           0.23           0.58           0.49           0.28           0.19"
      ]
     },
     "execution_count": 17,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "table1 = catalog[1]\n",
    "table1[0]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<i>Row index=0</i>\n",
       "<table id=\"table140189331393456\">\n",
       "<thead><tr><th>Flag</th><th>Note</th></tr></thead>\n",
       "<thead><tr><th>int16</th><th>str347</th></tr></thead>\n",
       "<tr><td>1</td><td>Source with TS&gt;35, which went to TS&lt;25 when changing the diffuse model (Section 3.7.3) or the analysis method (Section 3.7.4). Sources with TS&lt;=35 are not flagged with this bit because normal statistical fluctuations can push them to TS&lt;25.</td></tr>\n",
       "</table>"
      ],
      "text/plain": [
       "<Row index=0>\n",
       " Flag                                                                                                                       Note                                                                                                                      \n",
       "int16                                                                                                                      str347                                                                                                                     \n",
       "----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------\n",
       "    1 Source with TS>35, which went to TS<25 when changing the diffuse model (Section 3.7.3) or the analysis method (Section 3.7.4). Sources with TS<=35 are not flagged with this bit because normal statistical fluctuations can push them to TS<25."
      ]
     },
     "execution_count": 18,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "table2 = catalog[2]\n",
    "table2[0]"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "**J/ApJS/218/23/table4** and **J/ApJS/218/23/table8** contain positional and spectral information respectively. \n",
    "The first table has several entries for the same source, so before performing the match, let's restric the table to **unique** entries for the same source. We then match the tables based on the names in column **_3FGL** to get all information in a single table. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Number of matches : 3034\n"
     ]
    },
    {
     "data": {
      "text/html": [
       "<i>Row index=0</i>\n",
       "<table id=\"table140189331288464\">\n",
       "<thead><tr><th>_3FGL</th><th>Na</th><th>RAJ2000</th><th>DEJ2000</th><th>amaj</th><th>amin</th><th>phi</th><th>Sig</th><th>F35</th><th>S25</th><th>Gamma</th><th>Mod</th><th>Var</th><th>Flag</th><th>Assoc</th><th>TeV</th><th>Class</th><th>ID</th><th>Simbad</th><th>File</th><th>LC</th><th>F1</th><th>E_F1</th><th>F2</th><th>E_F2</th><th>F3</th><th>E_F3</th><th>F4</th><th>E_F4</th><th>F5</th><th>E_F5</th></tr></thead>\n",
       "<thead><tr><th></th><th></th><th>deg</th><th>deg</th><th>deg</th><th>deg</th><th>deg</th><th></th><th>1e-05 / (s m2)</th><th>fW / m2</th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>1e-05 / (s m2)</th><th>1e-05 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th></tr></thead>\n",
       "<thead><tr><th>str13</th><th>int16</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>int16</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>str2</th><th>str1</th><th>str12</th><th>str18</th><th>str1</th><th>str5</th><th>str26</th><th>str6</th><th>str13</th><th>str2</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th></tr></thead>\n",
       "<tr><td>J0000.1+6545</td><td>1</td><td>0.038</td><td>65.752</td><td>0.102</td><td>0.078</td><td>41</td><td>6.8</td><td>1.0</td><td>13.6</td><td>2.41</td><td>PL</td><td></td><td>3</td><td>2FGL J2359.6+6543c</td><td></td><td></td><td></td><td>Simbad</td><td>J0000.1p6545</td><td>LC</td><td>1.81</td><td>0.82</td><td>0.69</td><td>0.14</td><td>1.24</td><td>0.23</td><td>0.58</td><td>0.49</td><td>0.28</td><td>0.19</td></tr>\n",
       "</table>"
      ],
      "text/plain": [
       "<Row index=0>\n",
       "   _3FGL       Na  RAJ2000 DEJ2000   amaj    amin   phi    Sig        F35         S25    Gamma  Mod  Var   Flag       Assoc        TeV  Class   ID  Simbad     File      LC         F1             E_F1             F2             E_F2            F3            E_F3            F4            E_F4            F5            E_F5     \n",
       "                     deg     deg     deg     deg    deg          1e-05 / (s m2) fW / m2                                                                                      0.0001 / (s m2) 0.0001 / (s m2) 0.0001 / (s m2) 0.0001 / (s m2) 1e-05 / (s m2) 1e-05 / (s m2) 1e-06 / (s m2) 1e-06 / (s m2) 1e-06 / (s m2) 1e-06 / (s m2)\n",
       "   str13     int16 float32 float32 float32 float32 int16 float32    float32     float32 float32 str2 str1 str12       str18        str1  str5 str26  str6     str13     str2     float32         float32         float32         float32        float32        float32        float32        float32        float32        float32    \n",
       "------------ ----- ------- ------- ------- ------- ----- ------- -------------- ------- ------- ---- ---- ----- ------------------ ---- ----- ----- ------ ------------ ---- --------------- --------------- --------------- --------------- -------------- -------------- -------------- -------------- -------------- --------------\n",
       "J0000.1+6545     1   0.038  65.752   0.102   0.078    41     6.8            1.0    13.6    2.41   PL          3 2FGL J2359.6+6543c                  Simbad J0000.1p6545   LC            1.81            0.82            0.69            0.14           1.24           0.23           0.58           0.49           0.28           0.19"
      ]
     },
     "execution_count": 19,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "table0 = unique(table0, keys=\"_3FGL\")\n",
    "FERMI = join(\n",
    "    table0,\n",
    "    table1,\n",
    "    keys=\"_3FGL\",\n",
    "    join_type=\"inner\",\n",
    "    metadata_conflicts=\"silent\",\n",
    ")\n",
    "print(\"Number of matches :\", len(FERMI))\n",
    "FERMI[0]"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "We have a new table with **3034 FERMI sources with spatial and spectral information**. We move on to cross-match this table with the HESS-Simbad sources. This time the match will be based on positions. \n",
    "\n",
    "Lets have a look again a the hess_simbad table and it's content."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div><i>Table length=5</i>\n",
       "<table id=\"table140189331391200\" class=\"table-striped table-bordered table-condensed\">\n",
       "<thead><tr><th>MAIN_ID</th><th>RA</th><th>DEC</th><th>RA_PREC</th><th>DEC_PREC</th><th>COO_ERR_MAJA</th><th>COO_ERR_MINA</th><th>COO_ERR_ANGLE</th><th>COO_QUAL</th><th>COO_WAVELENGTH</th><th>COO_BIBCODE</th><th>OTYPE</th><th>RA_d</th><th>DEC_d</th><th>SCRIPT_NUMBER_ID</th></tr></thead>\n",
       "<thead><tr><th></th><th>&quot;h:m:s&quot;</th><th>&quot;d:m:s&quot;</th><th></th><th></th><th>mas</th><th>mas</th><th>deg</th><th></th><th></th><th></th><th></th><th>deg</th><th>deg</th><th></th></tr></thead>\n",
       "<thead><tr><th>object</th><th>str13</th><th>str13</th><th>int16</th><th>int16</th><th>float32</th><th>float32</th><th>int16</th><th>str1</th><th>str1</th><th>object</th><th>object</th><th>float64</th><th>float64</th><th>int32</th></tr></thead>\n",
       "<tr><td>HESS J0232+202</td><td>02 32 53.2</td><td>+20 16 21</td><td>5</td><td>5</td><td>--</td><td>--</td><td>0</td><td>D</td><td></td><td>2007A&amp;A...475L...9A</td><td>gamma</td><td>38.22170000</td><td>20.27250000</td><td>1</td></tr>\n",
       "<tr><td>HESS J0534+220</td><td>05 34</td><td>+22.0</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td></td><td>2008ApJ...682L..41H</td><td>gamma</td><td>83.50000000</td><td>22.00000000</td><td>1</td></tr>\n",
       "<tr><td>4FGL J0535.2-6736</td><td>05 36 00.01</td><td>-67 35 07.5</td><td>6</td><td>6</td><td>--</td><td>--</td><td>0</td><td>D</td><td>X</td><td>2012ApJ...759..123S</td><td>HighMassXBin</td><td>84.00004000</td><td>-67.58542000</td><td>1</td></tr>\n",
       "<tr><td>HD 259440</td><td>06 32 59.2566</td><td>+05 48 01.160</td><td>14</td><td>14</td><td>0.018</td><td>0.016</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>HighMassXBin</td><td>98.24690253</td><td>5.80032243</td><td>1</td></tr>\n",
       "<tr><td>NAME MONOCEROS NEB</td><td>06 38 43</td><td>+06 30.2</td><td>4</td><td>4</td><td>31000.000</td><td>18000.000</td><td>94</td><td>E</td><td></td><td>1988IRASP.C......0J</td><td>SNRemnant</td><td>99.67900000</td><td>6.50300000</td><td>1</td></tr>\n",
       "</table></div>"
      ],
      "text/plain": [
       "<Table length=5>\n",
       "     MAIN_ID             RA           DEC      ...    DEC_d     SCRIPT_NUMBER_ID\n",
       "                      \"h:m:s\"       \"d:m:s\"    ...     deg                      \n",
       "      object           str13         str13     ...   float64         int32      \n",
       "------------------ ------------- ------------- ... ------------ ----------------\n",
       "    HESS J0232+202    02 32 53.2     +20 16 21 ...  20.27250000                1\n",
       "    HESS J0534+220         05 34         +22.0 ...  22.00000000                1\n",
       " 4FGL J0535.2-6736   05 36 00.01   -67 35 07.5 ... -67.58542000                1\n",
       "         HD 259440 06 32 59.2566 +05 48 01.160 ...   5.80032243                1\n",
       "NAME MONOCEROS NEB      06 38 43      +06 30.2 ...   6.50300000                1"
      ]
     },
     "execution_count": 20,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "hess_simbad[0:5]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Create a skycoord object from the RA_d and DEC_d columns\n",
    "c_hess_simbad = SkyCoord(hess_simbad[\"RA_d\"], hess_simbad[\"DEC_d\"])\n",
    "c_fermi = SkyCoord(FERMI[\"RAJ2000\"], FERMI[\"DEJ2000\"])"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 22,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Number of possible hess-simbad matches: 97\n",
      "Number of possible fermi matches: 97\n"
     ]
    }
   ],
   "source": [
    "# Set the maximum separation\n",
    "max_sep = 1.0 * u.deg\n",
    "# For each row in the first catalog, look for the closest neighbor\n",
    "idx, d2d, d3d = c_hess_simbad.match_to_catalog_sky(c_fermi, 1)\n",
    "sep_constraint = d2d < max_sep\n",
    "\n",
    "# limit the tables to matches within the maximum separation\n",
    "hess_simbad_matches = hess_simbad[sep_constraint]\n",
    "fermi_matches = FERMI[idx[sep_constraint]]\n",
    "\n",
    "# Look at the number of matches in each table within the maximum separation\n",
    "print(\"Number of possible hess-simbad matches:\", len(hess_simbad_matches))\n",
    "print(\"Number of possible fermi matches:\", len(fermi_matches))"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "There are **83 HESS-Simbad-FERMI** possible matches within 1 degree for each row in the first table! \n",
    "Tables **hess_simbad_matches** and **fermi_matches** are the matched sources in hess_simbad and fermi, respectively, which are separated by less than 1 deg. But ideally we would like to have the result as a single table including the angular separation between the matches. Let's go do that."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 23,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Number of possible HESS-Simbad-Fermi matches 97\n"
     ]
    }
   ],
   "source": [
    "# Add the separation to the fermi Table and concatenate the matched tables\n",
    "fermi_matches[\"Ang_Sep\"] = d2d[sep_constraint]\n",
    "hess_simbad_fermi = hstack(\n",
    "    [hess_simbad_matches, fermi_matches],\n",
    "    metadata_conflicts=\"silent\",\n",
    ")\n",
    "\n",
    "print(\"Number of possible HESS-Simbad-Fermi matches\", len(hess_simbad_fermi))"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Note that the same Fermi source can be associated to different HESS sources. You can investigate those possible matches within 1deg (recommended) or limit to have unique entries. For the purpose of the exercice we choose option 2, but in general, we recommend to look at all possible matches to see which might be the true association (if any). "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 24,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div><i>Table length=73</i>\n",
       "<table id=\"table140190390229680\" class=\"table-striped table-bordered table-condensed\">\n",
       "<thead><tr><th>MAIN_ID</th><th>RA</th><th>DEC</th><th>RA_PREC</th><th>DEC_PREC</th><th>COO_ERR_MAJA</th><th>COO_ERR_MINA</th><th>COO_ERR_ANGLE</th><th>COO_QUAL</th><th>COO_WAVELENGTH</th><th>COO_BIBCODE</th><th>OTYPE</th><th>RA_d</th><th>DEC_d</th><th>SCRIPT_NUMBER_ID</th><th>_3FGL</th><th>Na</th><th>RAJ2000</th><th>DEJ2000</th><th>amaj</th><th>amin</th><th>phi</th><th>Sig</th><th>F35</th><th>S25</th><th>Gamma</th><th>Mod</th><th>Var</th><th>Flag</th><th>Assoc</th><th>TeV</th><th>Class</th><th>ID</th><th>Simbad</th><th>File</th><th>LC</th><th>F1</th><th>E_F1</th><th>F2</th><th>E_F2</th><th>F3</th><th>E_F3</th><th>F4</th><th>E_F4</th><th>F5</th><th>E_F5</th><th>Ang_Sep</th></tr></thead>\n",
       "<thead><tr><th></th><th>&quot;h:m:s&quot;</th><th>&quot;d:m:s&quot;</th><th></th><th></th><th>mas</th><th>mas</th><th>deg</th><th></th><th></th><th></th><th></th><th>deg</th><th>deg</th><th></th><th></th><th></th><th>deg</th><th>deg</th><th>deg</th><th>deg</th><th>deg</th><th></th><th>1e-05 / (s m2)</th><th>fW / m2</th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>1e-05 / (s m2)</th><th>1e-05 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>deg</th></tr></thead>\n",
       "<thead><tr><th>object</th><th>str13</th><th>str13</th><th>int16</th><th>int16</th><th>float32</th><th>float32</th><th>int16</th><th>str1</th><th>str1</th><th>object</th><th>object</th><th>float64</th><th>float64</th><th>int32</th><th>str13</th><th>int16</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>int16</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>str2</th><th>str1</th><th>str12</th><th>str18</th><th>str1</th><th>str5</th><th>str26</th><th>str6</th><th>str13</th><th>str2</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float64</th></tr></thead>\n",
       "<tr><td>HESS J0232+202</td><td>02 32 53.2</td><td>+20 16 21</td><td>5</td><td>5</td><td>--</td><td>--</td><td>0</td><td>D</td><td></td><td>2007A&amp;A...475L...9A</td><td>gamma</td><td>38.22170000</td><td>20.27250000</td><td>1</td><td>J0232.8+2016</td><td>1</td><td>38.219</td><td>20.271</td><td>0.055</td><td>0.047</td><td>-4</td><td>7.2</td><td>0.4</td><td>4.9</td><td>2.03</td><td>PL</td><td></td><td></td><td></td><td>P</td><td>bll</td><td>1ES 0229+200</td><td>Simbad</td><td>J0232.8p2016</td><td>LC</td><td>0.23</td><td>0.29</td><td>0.18</td><td>0.05</td><td>0.25</td><td>0.11</td><td>0.46</td><td>0.31</td><td>0.42</td><td>0.22</td><td>0.0029425561444422293</td></tr>\n",
       "<tr><td>HESS J0534+220</td><td>05 34</td><td>+22.0</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td></td><td>2008ApJ...682L..41H</td><td>gamma</td><td>83.50000000</td><td>22.00000000</td><td>1</td><td>J0534.5+2201</td><td>1</td><td>83.637</td><td>22.024</td><td>0.012</td><td>0.011</td><td>90</td><td>30.7</td><td>157.3</td><td>1471.9</td><td>2.23</td><td>EC</td><td>T</td><td></td><td>1FHL J0534.5+2201</td><td>P</td><td>PSR</td><td>PSR J0534+2200</td><td>Simbad</td><td>J0534.5p2201</td><td>LC</td><td>6.31</td><td>--</td><td>3.33</td><td>--</td><td>14.47</td><td>--</td><td>90.04</td><td>29.86</td><td>56.02</td><td>2.84</td><td>0.1292618808058602</td></tr>\n",
       "<tr><td>HD 259440</td><td>06 32 59.2566</td><td>+05 48 01.160</td><td>14</td><td>14</td><td>0.018</td><td>0.016</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>HighMassXBin</td><td>98.24690253</td><td>5.80032243</td><td>1</td><td>J0633.7+0632</td><td>4</td><td>98.438</td><td>6.541</td><td>0.018</td><td>0.018</td><td>71</td><td>57.9</td><td>17.1</td><td>124.4</td><td>2.16</td><td>EC</td><td></td><td></td><td>2FGL J0633.7+0633</td><td></td><td>PSR</td><td>LAT PSR J0633+0632</td><td>Simbad</td><td>J0633.7p0632</td><td>LC</td><td>8.43</td><td>1.05</td><td>4.67</td><td>0.21</td><td>14.08</td><td>0.50</td><td>25.80</td><td>1.61</td><td>1.05</td><td>0.35</td><td>0.7646571241230257</td></tr>\n",
       "<tr><td>NAME Vela X</td><td>08 33 08.880</td><td>-45 11 24.36</td><td>7</td><td>7</td><td>--</td><td>--</td><td>0</td><td>D</td><td></td><td>2015ApJS..217....2M</td><td>Pulsar</td><td>128.28700000</td><td>-45.19010000</td><td>1</td><td>J0833.1-4511e</td><td>3</td><td>128.287</td><td>-45.190</td><td>--</td><td>--</td><td>--</td><td>--</td><td>18.3</td><td>244.8</td><td>2.41</td><td>PL</td><td></td><td>5</td><td>1FHL J0833.1-4511e</td><td>E</td><td>PWN</td><td>Vela X</td><td>Simbad</td><td>J0833.1-4511e</td><td>LC</td><td>37.18</td><td>--</td><td>8.19</td><td>--</td><td>14.46</td><td>--</td><td>31.87</td><td>--</td><td>6.87</td><td>--</td><td>0.00010275196628510123</td></tr>\n",
       "<tr><td>NAME Vela Jr SN</td><td>08 52.0</td><td>-46 20</td><td>3</td><td>3</td><td>--</td><td>--</td><td>0</td><td>E</td><td>R</td><td>2009BASI...37...45G</td><td>SNRemnant</td><td>133.00000000</td><td>-46.33000000</td><td>1</td><td>J0852.7-4631e</td><td>3</td><td>133.200</td><td>-46.520</td><td>--</td><td>--</td><td>--</td><td>30.3</td><td>13.0</td><td>147.1</td><td>1.94</td><td>PL</td><td>T</td><td>10</td><td>1FGL J0854.0-4632</td><td>E</td><td>SNR</td><td>Vela Jr</td><td>Simbad</td><td>J0852.7-4631e</td><td>LC</td><td>9.39</td><td>2.21</td><td>3.41</td><td>0.28</td><td>7.54</td><td>0.63</td><td>19.79</td><td>2.39</td><td>13.22</td><td>1.28</td><td>0.23474752621627826</td></tr>\n",
       "<tr><td>PSR J1016-58</td><td>10 16 21.266</td><td>-58 57 11.70</td><td>7</td><td>7</td><td>1213.000</td><td>710.000</td><td>90</td><td>D</td><td>R</td><td>2015ApJ...814..128K</td><td>Pulsar</td><td>154.08860800</td><td>-58.95325000</td><td>1</td><td>J1016.3-5858</td><td>2</td><td>154.079</td><td>-58.967</td><td>0.031</td><td>0.029</td><td>-86</td><td>18.9</td><td>7.8</td><td>65.5</td><td>2.35</td><td>EC</td><td></td><td>5</td><td>2FGL J1016.5-5858</td><td>E</td><td>PSR</td><td>PSR J1016-5857</td><td>Simbad</td><td>J1016.3-5858</td><td>LC</td><td>7.61</td><td>3.73</td><td>2.20</td><td>0.43</td><td>7.33</td><td>0.63</td><td>13.16</td><td>1.51</td><td>0.80</td><td>0.34</td><td>0.014613267157304757</td></tr>\n",
       "<tr><td>2FGL J1019.0-5856</td><td>10 18 58.0</td><td>-58 56 36</td><td>5</td><td>5</td><td>--</td><td>--</td><td>0</td><td>D</td><td>G</td><td>2020ApJS..247...33A</td><td>HighMassXBin</td><td>154.74170000</td><td>-58.94330000</td><td>1</td><td>J1018.9-5856</td><td>4</td><td>154.730</td><td>-58.946</td><td>0.014</td><td>0.014</td><td>28</td><td>52.2</td><td>27.1</td><td>250.3</td><td>2.30</td><td>LP</td><td></td><td></td><td>1FHL J1018.9-5855</td><td>E</td><td>HMB</td><td>1FGL J1018.6-5856</td><td>Simbad</td><td>J1018.9-5856</td><td>LC</td><td>26.67</td><td>1.08</td><td>11.41</td><td>0.55</td><td>21.92</td><td>0.78</td><td>32.61</td><td>1.97</td><td>1.42</td><td>0.43</td><td>0.00661526473894261</td></tr>\n",
       "<tr><td>FGES J1023.3-5747</td><td>10 23 15.1831</td><td>-57 46 34.784</td><td>9</td><td>9</td><td>--</td><td>--</td><td>0</td><td>E</td><td>G</td><td>2018A&amp;A...612A...1H</td><td>gamma</td><td>155.81326306</td><td>-57.77632889</td><td>1</td><td>J1023.1-5745</td><td>3</td><td>155.790</td><td>-57.759</td><td>0.018</td><td>0.018</td><td>-32</td><td>31.2</td><td>19.9</td><td>148.1</td><td>2.25</td><td>EC</td><td></td><td></td><td>1FGL J1023.0-5746</td><td>E</td><td>PSR</td><td>LAT PSR J1023-5746</td><td>Simbad</td><td>J1023.1-5745</td><td>LC</td><td>0.32</td><td>7.01</td><td>6.33</td><td>0.64</td><td>17.51</td><td>1.02</td><td>25.37</td><td>1.96</td><td>1.59</td><td>0.47</td><td>0.02131765846051888</td></tr>\n",
       "<tr><td>PSR J1028-5819</td><td>10 28 27.888</td><td>-58 19 06.14</td><td>7</td><td>7</td><td>53.000</td><td>30.000</td><td>90</td><td>B</td><td>R</td><td>2015ApJ...814..128K</td><td>Pulsar</td><td>157.11620000</td><td>-58.31837200</td><td>1</td><td>J1028.4-5819</td><td>5</td><td>157.123</td><td>-58.320</td><td>0.012</td><td>0.012</td><td>-74</td><td>57.5</td><td>33.3</td><td>251.2</td><td>2.18</td><td>EC</td><td></td><td></td><td>1FHL J1028.4-5819</td><td></td><td>PSR</td><td>PSR J1028-5819</td><td>Simbad</td><td>J1028.4-5819</td><td>LC</td><td>13.98</td><td>3.65</td><td>9.39</td><td>0.68</td><td>26.78</td><td>0.91</td><td>50.11</td><td>2.32</td><td>3.55</td><td>0.60</td><td>0.003926177933531473</td></tr>\n",
       "<tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr>\n",
       "<tr><td>ARGO J1907+0627</td><td>19 08 12.24</td><td>+06 23 30.8</td><td>6</td><td>6</td><td>208416.000</td><td>208416.000</td><td>90</td><td>E</td><td>G</td><td>2020ApJ...905...76A</td><td>gamma</td><td>287.05100000</td><td>6.39188000</td><td>1</td><td>J1907.9+0602</td><td>4</td><td>286.986</td><td>6.039</td><td>0.013</td><td>0.013</td><td>-46</td><td>84.0</td><td>38.4</td><td>319.1</td><td>2.24</td><td>EC</td><td></td><td></td><td>1FHL J1907.7+0600</td><td>E</td><td>PSR</td><td>LAT PSR J1907+0602</td><td>Simbad</td><td>J1907.9p0602</td><td>LC</td><td>30.88</td><td>1.76</td><td>12.22</td><td>0.32</td><td>31.16</td><td>0.80</td><td>60.89</td><td>2.65</td><td>3.08</td><td>0.62</td><td>0.358748485021207</td></tr>\n",
       "<tr><td>ARGO J1912+1026</td><td>19 12 14.9</td><td>+10 21 06</td><td>5</td><td>5</td><td>306640.000</td><td>306640.000</td><td>90</td><td>E</td><td>G</td><td>2020ApJ...905...76A</td><td>gamma</td><td>288.06200000</td><td>10.35160000</td><td>1</td><td>J1908.9+1022</td><td>1</td><td>287.228</td><td>10.375</td><td>0.126</td><td>0.096</td><td>-82</td><td>6.4</td><td>1.7</td><td>27.2</td><td>2.59</td><td>PL</td><td></td><td>3,4</td><td></td><td></td><td></td><td></td><td>Simbad</td><td>J1908.9p1022</td><td>LC</td><td>3.88</td><td>1.57</td><td>1.05</td><td>0.24</td><td>1.57</td><td>0.43</td><td>1.10</td><td>0.88</td><td>0.37</td><td>0.30</td><td>0.8207313998263458</td></tr>\n",
       "<tr><td>W 49b</td><td>19 11 09.000</td><td>+09 06 24.00</td><td>7</td><td>7</td><td>--</td><td>--</td><td>0</td><td>D</td><td></td><td>2015ApJS..217....2M</td><td>SNRemnant</td><td>287.78750000</td><td>9.10666700</td><td>1</td><td>J1910.9+0906</td><td>4</td><td>287.744</td><td>9.101</td><td>0.017</td><td>0.016</td><td>-80</td><td>41.8</td><td>20.3</td><td>183.5</td><td>2.18</td><td>LP</td><td></td><td></td><td>1FHL J1911.0+0905</td><td></td><td>snr</td><td>W 49B</td><td>Simbad</td><td>J1910.9p0906</td><td>LC</td><td>17.51</td><td>1.84</td><td>5.99</td><td>0.42</td><td>13.30</td><td>0.74</td><td>43.12</td><td>2.45</td><td>7.33</td><td>0.92</td><td>0.04333592910904295</td></tr>\n",
       "<tr><td>HESS J1915+115</td><td>19 15</td><td>+11.5</td><td>2</td><td>2</td><td>--</td><td>--</td><td>0</td><td>E</td><td>G</td><td>2021ApJ...917....6A</td><td>gamma</td><td>288.80000000</td><td>11.50000000</td><td>1</td><td>J1915.9+1112</td><td>2</td><td>289.000</td><td>11.216</td><td>0.147</td><td>0.120</td><td>2</td><td>10.7</td><td>3.8</td><td>38.2</td><td>2.41</td><td>LP</td><td></td><td>3,4</td><td>2FGL J1916.1+1106</td><td></td><td>spp</td><td></td><td>Simbad</td><td>J1915.9p1112</td><td>LC</td><td>6.28</td><td>1.22</td><td>1.81</td><td>0.27</td><td>3.05</td><td>0.58</td><td>4.21</td><td>1.42</td><td>0.00</td><td>0.34</td><td>0.34511568175831536</td></tr>\n",
       "<tr><td>HESS J1923+141</td><td>19 23.0</td><td>+14 06</td><td>3</td><td>3</td><td>--</td><td>--</td><td>0</td><td>E</td><td></td><td>2010ApJ...709L...6A</td><td>gamma</td><td>290.75000000</td><td>14.10000000</td><td>1</td><td>J1923.2+1408e</td><td>5</td><td>290.818</td><td>14.145</td><td>--</td><td>--</td><td>--</td><td>75.0</td><td>39.6</td><td>345.8</td><td>2.15</td><td>LP</td><td></td><td></td><td>0FGL J1923.0+1411</td><td>E</td><td>SNR</td><td>W51C</td><td>Simbad</td><td>J1923.2p1408e</td><td>LC</td><td>25.15</td><td>2.24</td><td>11.35</td><td>0.35</td><td>29.47</td><td>0.82</td><td>76.45</td><td>3.00</td><td>16.42</td><td>1.27</td><td>0.07983070024905738</td></tr>\n",
       "<tr><td>SNR G054.1+00.3</td><td>19 30 10.6</td><td>+18 50 22</td><td>5</td><td>5</td><td>314633.000</td><td>314633.000</td><td>90</td><td>E</td><td>G</td><td>2020ApJ...905...76A</td><td>SNRemnant</td><td>292.54400000</td><td>18.83940000</td><td>1</td><td>J1928.4+1838</td><td>1</td><td>292.113</td><td>18.634</td><td>0.175</td><td>0.131</td><td>-23</td><td>5.8</td><td>1.6</td><td>21.9</td><td>2.42</td><td>PL</td><td></td><td>1,4,5</td><td></td><td></td><td></td><td></td><td>Simbad</td><td>J1928.4p1838</td><td>LC</td><td>0.27</td><td>1.95</td><td>0.99</td><td>0.26</td><td>1.26</td><td>0.39</td><td>1.65</td><td>0.93</td><td>0.64</td><td>0.37</td><td>0.45692117306583563</td></tr>\n",
       "<tr><td>HAWC J1928+178</td><td>19 28.4</td><td>+17 49</td><td>3</td><td>3</td><td>--</td><td>--</td><td>0</td><td>E</td><td>G</td><td>2021ApJ...917....6A</td><td>gamma</td><td>292.10000000</td><td>17.82000000</td><td>1</td><td>J1928.9+1739</td><td>3</td><td>292.237</td><td>17.657</td><td>0.080</td><td>0.058</td><td>-5</td><td>8.5</td><td>3.5</td><td>25.0</td><td>2.32</td><td>LP</td><td></td><td>3,4</td><td>2FGL J1928.8+1740c</td><td></td><td></td><td></td><td>Simbad</td><td>J1928.9p1739</td><td>LC</td><td>3.54</td><td>1.61</td><td>1.07</td><td>0.27</td><td>2.14</td><td>0.49</td><td>4.38</td><td>1.24</td><td>0.21</td><td>0.28</td><td>0.20879630393332074</td></tr>\n",
       "<tr><td>QSO B2005-489</td><td>20 09 25.3903</td><td>-48 49 53.725</td><td>14</td><td>14</td><td>0.026</td><td>0.020</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>BLLac</td><td>302.35579329</td><td>-48.83159029</td><td>1</td><td>J2009.3-4849</td><td>4</td><td>302.349</td><td>-48.828</td><td>0.018</td><td>0.018</td><td>-33</td><td>40.3</td><td>3.6</td><td>44.9</td><td>1.77</td><td>PL</td><td>T</td><td></td><td>1FHL J2009.4-4849</td><td>P</td><td>BLL</td><td>PKS 2005-489</td><td>Simbad</td><td>J2009.3-4849</td><td>LC</td><td>1.17</td><td>0.25</td><td>0.52</td><td>0.05</td><td>2.09</td><td>0.17</td><td>10.15</td><td>0.93</td><td>4.75</td><td>0.63</td><td>0.005735961234814628</td></tr>\n",
       "<tr><td>QSO B2155-304</td><td>21 58 52.0652</td><td>-30 13 32.118</td><td>14</td><td>14</td><td>0.017</td><td>0.014</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>BLLac</td><td>329.71693844</td><td>-30.22558846</td><td>1</td><td>J2158.8-3013</td><td>6</td><td>329.720</td><td>-30.227</td><td>0.009</td><td>0.009</td><td>-87</td><td>142.1</td><td>21.7</td><td>230.5</td><td>1.83</td><td>LP</td><td>T</td><td></td><td>1FHL J2158.8-3013</td><td>P</td><td>bll</td><td>PKS 2155-304</td><td>Simbad</td><td>J2158.8-3013</td><td>LC</td><td>6.47</td><td>0.45</td><td>3.62</td><td>0.09</td><td>13.42</td><td>0.36</td><td>57.34</td><td>2.10</td><td>23.98</td><td>1.35</td><td>0.0029983695652119288</td></tr>\n",
       "<tr><td>QSO B2356-309</td><td>23 59 07.9034</td><td>-30 37 40.671</td><td>14</td><td>14</td><td>0.094</td><td>0.072</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>BLLac</td><td>359.78293125</td><td>-30.62796419</td><td>1</td><td>J2359.3-3038</td><td>3</td><td>359.829</td><td>-30.646</td><td>0.054</td><td>0.051</td><td>-7</td><td>11.1</td><td>0.6</td><td>6.6</td><td>2.02</td><td>PL</td><td></td><td></td><td>1FHL J2359.2-3037</td><td>P</td><td>bll</td><td>H 2356-309</td><td>Simbad</td><td>J2359.3-3038</td><td>LC</td><td>0.77</td><td>0.28</td><td>0.12</td><td>0.04</td><td>0.44</td><td>0.10</td><td>1.27</td><td>0.40</td><td>0.56</td><td>0.25</td><td>0.04355625621824888</td></tr>\n",
       "</table></div>"
      ],
      "text/plain": [
       "<Table length=73>\n",
       "     MAIN_ID            RA      ...      E_F5             Ang_Sep        \n",
       "                     \"h:m:s\"    ... 1e-06 / (s m2)          deg          \n",
       "      object          str13     ...    float32            float64        \n",
       "----------------- ------------- ... -------------- ----------------------\n",
       "   HESS J0232+202    02 32 53.2 ...           0.22  0.0029425561444422293\n",
       "   HESS J0534+220         05 34 ...           2.84     0.1292618808058602\n",
       "        HD 259440 06 32 59.2566 ...           0.35     0.7646571241230257\n",
       "      NAME Vela X  08 33 08.880 ...             -- 0.00010275196628510123\n",
       "  NAME Vela Jr SN       08 52.0 ...           1.28    0.23474752621627826\n",
       "     PSR J1016-58  10 16 21.266 ...           0.34   0.014613267157304757\n",
       "2FGL J1019.0-5856    10 18 58.0 ...           0.43    0.00661526473894261\n",
       "FGES J1023.3-5747 10 23 15.1831 ...           0.47    0.02131765846051888\n",
       "   PSR J1028-5819  10 28 27.888 ...           0.60   0.003926177933531473\n",
       "              ...           ... ...            ...                    ...\n",
       "  ARGO J1907+0627   19 08 12.24 ...           0.62      0.358748485021207\n",
       "  ARGO J1912+1026    19 12 14.9 ...           0.30     0.8207313998263458\n",
       "            W 49b  19 11 09.000 ...           0.92    0.04333592910904295\n",
       "   HESS J1915+115         19 15 ...           0.34    0.34511568175831536\n",
       "   HESS J1923+141       19 23.0 ...           1.27    0.07983070024905738\n",
       "  SNR G054.1+00.3    19 30 10.6 ...           0.37    0.45692117306583563\n",
       "   HAWC J1928+178       19 28.4 ...           0.28    0.20879630393332074\n",
       "    QSO B2005-489 20 09 25.3903 ...           0.63   0.005735961234814628\n",
       "    QSO B2155-304 21 58 52.0652 ...           1.35  0.0029983695652119288\n",
       "    QSO B2356-309 23 59 07.9034 ...           0.25    0.04355625621824888"
      ]
     },
     "execution_count": 24,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Limit to unique 3FGL sources, this will keep the first row of each duplicate\n",
    "# Note that one could sort them before that\n",
    "hess_simbad_fermi.sort(\"Ang_Sep\")\n",
    "hess_simbad_fermi = unique(hess_simbad_fermi, keys=\"_3FGL\", keep=\"first\")\n",
    "hess_simbad_fermi"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 25,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/plain": [
       "'There are 73 FERMI-HESS-Simbad matches'"
      ]
     },
     "execution_count": 25,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "f\"There are {len(hess_simbad_fermi)} FERMI-HESS-Simbad matches\""
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Some of these associations are of known nature. "
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "\n",
    "[![Vizier](https://custom-icon-badges.demolab.com/badge/Vizier-gray.svg?logo=vizier&logoColor=orange&logoWidth=20)](https://vizier.cds.unistra.fr/viz-bin/VizieR \"https://vizier.cds.unistra.fr/viz-bin/VizieR\")\n",
    "\n",
    "Let's query the ViZier catalog **J/ApJ/810/14** : *Third catalog of LAT-detected AGNs (3LAC) (Ackermann+, 2015)*. It lists 3LAC sources classified as AGNS. Let's have a look at the catalog in question:\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 26,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "J/ApJ/810/14/highlat :  High latitude (|b|>10deg) 3LAC full  sample and fluxes\n",
      "J/ApJ/810/14/lowlat :  Low latitude (|b|<10deg) sample  and fluxes\n",
      "J/ApJ/810/14/table7 :  Sources from earlier FGL catalogs missing in 3LAC\n",
      "J/ApJ/810/14/table10 :  Properties of the 3FGL very-high-energy (VHE) AGNs\n",
      "J/ApJ/810/14/table2 :  *List of ATCA blazar candidates\n"
     ]
    }
   ],
   "source": [
    "Vizier.ROW_LIMIT = -1\n",
    "catalog = Vizier.get_catalogs(\"J/ApJ/810/14\")\n",
    "for tab in catalog:\n",
    "    print(tab.meta[\"name\"], \": \", tab.meta[\"description\"])"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Table **J/ApJ/810/14/table10** lists the properties of very-high-energy ANGs. Let's have a look at that table:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 27,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div><i>Table length=55</i>\n",
       "<table id=\"table140188981640400\" class=\"table-striped table-bordered table-condensed\">\n",
       "<thead><tr><th>_3FGL</th><th>LL</th><th>VHE</th><th>SpCl</th><th>SEDCl</th><th>z</th><th>alpha</th><th>e_alpha</th><th>Var</th></tr></thead>\n",
       "<thead><tr><th>str12</th><th>str1</th><th>str21</th><th>str6</th><th>str3</th><th>float32</th><th>float32</th><th>float32</th><th>float64</th></tr></thead>\n",
       "<tr><td>J0013.9-1853</td><td></td><td>SHBL J001355.9-185406</td><td>bll</td><td>HSP</td><td>0.094</td><td>1.935</td><td>0.167</td><td>36.46</td></tr>\n",
       "<tr><td>J0033.6-1921</td><td></td><td>KUV 00311-1938</td><td>bll</td><td>HSP</td><td>0.610</td><td>1.715</td><td>0.035</td><td>64.62</td></tr>\n",
       "<tr><td>J0035.9+5949</td><td>L</td><td>1ES J0033+595</td><td>bll</td><td>HSP</td><td>--</td><td>1.898</td><td>0.042</td><td>69.55</td></tr>\n",
       "<tr><td>J0136.5+3905</td><td></td><td>RGB J0136+391</td><td>bll</td><td>HSP</td><td>--</td><td>1.696</td><td>0.025</td><td>62.30</td></tr>\n",
       "<tr><td>J0152.6+0148</td><td></td><td>RGB J0152+017</td><td>bll</td><td>HSP</td><td>0.080</td><td>1.887</td><td>0.103</td><td>51.76</td></tr>\n",
       "<tr><td>J0222.6+4301</td><td></td><td>3C 66A</td><td>bll</td><td>ISP</td><td>0.444</td><td>1.880</td><td>0.017</td><td>885.04</td></tr>\n",
       "<tr><td>J0232.8+2016</td><td></td><td>1ES 0229+200</td><td>bll</td><td>HSP</td><td>0.139</td><td>2.025</td><td>0.150</td><td>49.16</td></tr>\n",
       "<tr><td>J0303.4-2407</td><td></td><td>PKS 0301-243</td><td>bll</td><td>HSP</td><td>0.260</td><td>1.918</td><td>0.022</td><td>676.85</td></tr>\n",
       "<tr><td>J0316.6+4119</td><td></td><td>IC 310</td><td>rdg</td><td>HSP</td><td>0.019</td><td>1.902</td><td>0.143</td><td>38.74</td></tr>\n",
       "<tr><td>J0319.8+1847</td><td></td><td>RBS 0413</td><td>bll</td><td>HSP</td><td>0.190</td><td>1.572</td><td>0.102</td><td>76.33</td></tr>\n",
       "<tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr>\n",
       "<tr><td>J1728.3+5013</td><td></td><td>1ES 1727+502</td><td>bll</td><td>HSP</td><td>0.055</td><td>1.960</td><td>0.065</td><td>54.08</td></tr>\n",
       "<tr><td>J1743.9+1934</td><td></td><td>1ES 1741+196</td><td>bll</td><td>HSP</td><td>0.084</td><td>1.777</td><td>0.108</td><td>38.27</td></tr>\n",
       "<tr><td>J2000.0+6509</td><td></td><td>1ES 1959+650</td><td>bll</td><td>HSP</td><td>0.047</td><td>1.883</td><td>0.022</td><td>158.37</td></tr>\n",
       "<tr><td>J2001.1+4352</td><td>L</td><td>MAGIC J2001+435</td><td>bll</td><td>ISP</td><td>--</td><td>1.971</td><td>0.022</td><td>341.11</td></tr>\n",
       "<tr><td>J2009.3-4849</td><td></td><td>PKS 2005-489</td><td>bll</td><td>-</td><td>0.071</td><td>1.773</td><td>0.031</td><td>131.06</td></tr>\n",
       "<tr><td>J2158.8-3013</td><td></td><td>PKS 2155-304</td><td>bll</td><td>HSP</td><td>0.116</td><td>1.750</td><td>0.018</td><td>618.50</td></tr>\n",
       "<tr><td>J2202.7+4217</td><td></td><td>BL Lacertae</td><td>bll</td><td>ISP</td><td>0.069</td><td>2.161</td><td>0.017</td><td>2340.22</td></tr>\n",
       "<tr><td>J2250.1+3825</td><td></td><td>B3 2247+381</td><td>bll</td><td>HSP</td><td>0.119</td><td>1.912</td><td>0.074</td><td>52.42</td></tr>\n",
       "<tr><td>J2347.0+5142</td><td>L</td><td>1ES 2344+514</td><td>bll</td><td>HSP</td><td>0.044</td><td>1.782</td><td>0.039</td><td>100.97</td></tr>\n",
       "<tr><td>J2359.3-3038</td><td></td><td>H 2356-309</td><td>bll</td><td>HSP</td><td>0.165</td><td>2.022</td><td>0.115</td><td>40.97</td></tr>\n",
       "</table></div>"
      ],
      "text/plain": [
       "<Table length=55>\n",
       "   _3FGL      LL           VHE          SpCl ...  alpha  e_alpha   Var   \n",
       "   str12     str1         str21         str6 ... float32 float32 float64 \n",
       "------------ ---- --------------------- ---- ... ------- ------- --------\n",
       "J0013.9-1853      SHBL J001355.9-185406  bll ...   1.935   0.167    36.46\n",
       "J0033.6-1921             KUV 00311-1938  bll ...   1.715   0.035    64.62\n",
       "J0035.9+5949    L         1ES J0033+595  bll ...   1.898   0.042    69.55\n",
       "J0136.5+3905              RGB J0136+391  bll ...   1.696   0.025    62.30\n",
       "J0152.6+0148              RGB J0152+017  bll ...   1.887   0.103    51.76\n",
       "J0222.6+4301                     3C 66A  bll ...   1.880   0.017   885.04\n",
       "J0232.8+2016               1ES 0229+200  bll ...   2.025   0.150    49.16\n",
       "J0303.4-2407               PKS 0301-243  bll ...   1.918   0.022   676.85\n",
       "J0316.6+4119                     IC 310  rdg ...   1.902   0.143    38.74\n",
       "J0319.8+1847                   RBS 0413  bll ...   1.572   0.102    76.33\n",
       "         ...  ...                   ...  ... ...     ...     ...      ...\n",
       "J1728.3+5013               1ES 1727+502  bll ...   1.960   0.065    54.08\n",
       "J1743.9+1934               1ES 1741+196  bll ...   1.777   0.108    38.27\n",
       "J2000.0+6509               1ES 1959+650  bll ...   1.883   0.022   158.37\n",
       "J2001.1+4352    L       MAGIC J2001+435  bll ...   1.971   0.022   341.11\n",
       "J2009.3-4849               PKS 2005-489  bll ...   1.773   0.031   131.06\n",
       "J2158.8-3013               PKS 2155-304  bll ...   1.750   0.018   618.50\n",
       "J2202.7+4217                BL Lacertae  bll ...   2.161   0.017  2340.22\n",
       "J2250.1+3825                B3 2247+381  bll ...   1.912   0.074    52.42\n",
       "J2347.0+5142    L          1ES 2344+514  bll ...   1.782   0.039   100.97\n",
       "J2359.3-3038                 H 2356-309  bll ...   2.022   0.115    40.97"
      ]
     },
     "execution_count": 27,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "table10 = catalog[3]\n",
    "table10"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "There are no coordinates, only names are given in column **_3FGL**. Let's see how many of these AGNs are within our table of matches **hess_simbad_fermi**:"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 28,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Number of matches : 5\n"
     ]
    },
    {
     "data": {
      "text/html": [
       "<div><i>Table length=5</i>\n",
       "<table id=\"table140188981640256\" class=\"table-striped table-bordered table-condensed\">\n",
       "<thead><tr><th>MAIN_ID</th><th>RA</th><th>DEC</th><th>RA_PREC</th><th>DEC_PREC</th><th>COO_ERR_MAJA</th><th>COO_ERR_MINA</th><th>COO_ERR_ANGLE</th><th>COO_QUAL</th><th>COO_WAVELENGTH</th><th>COO_BIBCODE</th><th>OTYPE</th><th>RA_d</th><th>DEC_d</th><th>SCRIPT_NUMBER_ID</th><th>_3FGL</th><th>Na</th><th>RAJ2000</th><th>DEJ2000</th><th>amaj</th><th>amin</th><th>phi</th><th>Sig</th><th>F35</th><th>S25</th><th>Gamma</th><th>Mod</th><th>Var_1</th><th>Flag</th><th>Assoc</th><th>TeV</th><th>Class</th><th>ID</th><th>Simbad</th><th>File</th><th>LC</th><th>F1</th><th>E_F1</th><th>F2</th><th>E_F2</th><th>F3</th><th>E_F3</th><th>F4</th><th>E_F4</th><th>F5</th><th>E_F5</th><th>Ang_Sep</th><th>LL</th><th>VHE</th><th>SpCl</th><th>SEDCl</th><th>z</th><th>alpha</th><th>e_alpha</th><th>Var_2</th></tr></thead>\n",
       "<thead><tr><th></th><th>&quot;h:m:s&quot;</th><th>&quot;d:m:s&quot;</th><th></th><th></th><th>mas</th><th>mas</th><th>deg</th><th></th><th></th><th></th><th></th><th>deg</th><th>deg</th><th></th><th></th><th></th><th>deg</th><th>deg</th><th>deg</th><th>deg</th><th>deg</th><th></th><th>1e-05 / (s m2)</th><th>fW / m2</th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>0.0001 / (s m2)</th><th>1e-05 / (s m2)</th><th>1e-05 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>1e-06 / (s m2)</th><th>deg</th><th></th><th></th><th></th><th></th><th></th><th></th><th></th><th></th></tr></thead>\n",
       "<thead><tr><th>object</th><th>str13</th><th>str13</th><th>int16</th><th>int16</th><th>float32</th><th>float32</th><th>int16</th><th>str1</th><th>str1</th><th>object</th><th>object</th><th>float64</th><th>float64</th><th>int32</th><th>str13</th><th>int16</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>int16</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>str2</th><th>str1</th><th>str12</th><th>str18</th><th>str1</th><th>str5</th><th>str26</th><th>str6</th><th>str13</th><th>str2</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float32</th><th>float64</th><th>str1</th><th>str21</th><th>str6</th><th>str3</th><th>float32</th><th>float32</th><th>float32</th><th>float64</th></tr></thead>\n",
       "<tr><td>HESS J0232+202</td><td>02 32 53.2</td><td>+20 16 21</td><td>5</td><td>5</td><td>--</td><td>--</td><td>0</td><td>D</td><td></td><td>2007A&amp;A...475L...9A</td><td>gamma</td><td>38.22170000</td><td>20.27250000</td><td>1</td><td>J0232.8+2016</td><td>1</td><td>38.219</td><td>20.271</td><td>0.055</td><td>0.047</td><td>-4</td><td>7.2</td><td>0.4</td><td>4.9</td><td>2.03</td><td>PL</td><td></td><td></td><td></td><td>P</td><td>bll</td><td>1ES 0229+200</td><td>Simbad</td><td>J0232.8p2016</td><td>LC</td><td>0.23</td><td>0.29</td><td>0.18</td><td>0.05</td><td>0.25</td><td>0.11</td><td>0.46</td><td>0.31</td><td>0.42</td><td>0.22</td><td>0.0029425561444422293</td><td></td><td>1ES 0229+200</td><td>bll</td><td>HSP</td><td>0.139</td><td>2.025</td><td>0.150</td><td>49.16</td></tr>\n",
       "<tr><td>Mrk  421</td><td>11 04 27.3140</td><td>+38 12 31.798</td><td>14</td><td>14</td><td>0.012</td><td>0.015</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>BLLac</td><td>166.11380868</td><td>38.20883292</td><td>1</td><td>J1104.4+3812</td><td>7</td><td>166.118</td><td>38.210</td><td>0.007</td><td>0.007</td><td>-12</td><td>190.3</td><td>30.3</td><td>383.0</td><td>1.77</td><td>PL</td><td>T</td><td></td><td>1FHL J1104.4+3812</td><td>P</td><td>BLL</td><td>Mkn 421</td><td>Simbad</td><td>J1104.4p3812</td><td>LC</td><td>10.19</td><td>0.30</td><td>4.80</td><td>0.09</td><td>17.98</td><td>0.39</td><td>82.34</td><td>2.40</td><td>42.61</td><td>1.71</td><td>0.00349093401277826</td><td></td><td>Markarian 421</td><td>bll</td><td>HSP</td><td>0.031</td><td>1.772</td><td>0.008</td><td>755.10</td></tr>\n",
       "<tr><td>QSO B2005-489</td><td>20 09 25.3903</td><td>-48 49 53.725</td><td>14</td><td>14</td><td>0.026</td><td>0.020</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>BLLac</td><td>302.35579329</td><td>-48.83159029</td><td>1</td><td>J2009.3-4849</td><td>4</td><td>302.349</td><td>-48.828</td><td>0.018</td><td>0.018</td><td>-33</td><td>40.3</td><td>3.6</td><td>44.9</td><td>1.77</td><td>PL</td><td>T</td><td></td><td>1FHL J2009.4-4849</td><td>P</td><td>BLL</td><td>PKS 2005-489</td><td>Simbad</td><td>J2009.3-4849</td><td>LC</td><td>1.17</td><td>0.25</td><td>0.52</td><td>0.05</td><td>2.09</td><td>0.17</td><td>10.15</td><td>0.93</td><td>4.75</td><td>0.63</td><td>0.005735961234814628</td><td></td><td>PKS 2005-489</td><td>bll</td><td>-</td><td>0.071</td><td>1.773</td><td>0.031</td><td>131.06</td></tr>\n",
       "<tr><td>QSO B2155-304</td><td>21 58 52.0652</td><td>-30 13 32.118</td><td>14</td><td>14</td><td>0.017</td><td>0.014</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>BLLac</td><td>329.71693844</td><td>-30.22558846</td><td>1</td><td>J2158.8-3013</td><td>6</td><td>329.720</td><td>-30.227</td><td>0.009</td><td>0.009</td><td>-87</td><td>142.1</td><td>21.7</td><td>230.5</td><td>1.83</td><td>LP</td><td>T</td><td></td><td>1FHL J2158.8-3013</td><td>P</td><td>bll</td><td>PKS 2155-304</td><td>Simbad</td><td>J2158.8-3013</td><td>LC</td><td>6.47</td><td>0.45</td><td>3.62</td><td>0.09</td><td>13.42</td><td>0.36</td><td>57.34</td><td>2.10</td><td>23.98</td><td>1.35</td><td>0.0029983695652119288</td><td></td><td>PKS 2155-304</td><td>bll</td><td>HSP</td><td>0.116</td><td>1.750</td><td>0.018</td><td>618.50</td></tr>\n",
       "<tr><td>QSO B2356-309</td><td>23 59 07.9034</td><td>-30 37 40.671</td><td>14</td><td>14</td><td>0.094</td><td>0.072</td><td>90</td><td>A</td><td>O</td><td>2020yCat.1350....0G</td><td>BLLac</td><td>359.78293125</td><td>-30.62796419</td><td>1</td><td>J2359.3-3038</td><td>3</td><td>359.829</td><td>-30.646</td><td>0.054</td><td>0.051</td><td>-7</td><td>11.1</td><td>0.6</td><td>6.6</td><td>2.02</td><td>PL</td><td></td><td></td><td>1FHL J2359.2-3037</td><td>P</td><td>bll</td><td>H 2356-309</td><td>Simbad</td><td>J2359.3-3038</td><td>LC</td><td>0.77</td><td>0.28</td><td>0.12</td><td>0.04</td><td>0.44</td><td>0.10</td><td>1.27</td><td>0.40</td><td>0.56</td><td>0.25</td><td>0.04355625621824888</td><td></td><td>H 2356-309</td><td>bll</td><td>HSP</td><td>0.165</td><td>2.022</td><td>0.115</td><td>40.97</td></tr>\n",
       "</table></div>"
      ],
      "text/plain": [
       "<Table length=5>\n",
       "   MAIN_ID           RA           DEC      RA_PREC ...  alpha  e_alpha  Var_2  \n",
       "                  \"h:m:s\"       \"d:m:s\"            ...                         \n",
       "    object         str13         str13      int16  ... float32 float32 float64 \n",
       "-------------- ------------- ------------- ------- ... ------- ------- --------\n",
       "HESS J0232+202    02 32 53.2     +20 16 21       5 ...   2.025   0.150    49.16\n",
       "      Mrk  421 11 04 27.3140 +38 12 31.798      14 ...   1.772   0.008   755.10\n",
       " QSO B2005-489 20 09 25.3903 -48 49 53.725      14 ...   1.773   0.031   131.06\n",
       " QSO B2155-304 21 58 52.0652 -30 13 32.118      14 ...   1.750   0.018   618.50\n",
       " QSO B2356-309 23 59 07.9034 -30 37 40.671      14 ...   2.022   0.115    40.97"
      ]
     },
     "execution_count": 28,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "hess_simbad_fermi_AGN = join(\n",
    "    hess_simbad_fermi,\n",
    "    table10,\n",
    "    keys=\"_3FGL\",\n",
    "    join_type=\"inner\",\n",
    "    metadata_conflicts=\"silent\",\n",
    ")\n",
    "print(\"Number of matches :\", len(hess_simbad_fermi_AGN))\n",
    "hess_simbad_fermi_AGN"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "There are a few **AGNs** ! Let's have a look at their properties and see how they compare with the rest of the population. "
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step #4 - Searchig for relative locations in a \"high-energy color-color diagram\"\n",
    "*How to trace various object properties of a given catalogue against each other and to point out specific sub-samples in the resulting plot.*\n",
    "\n",
    "The next goal is to look for correlations between different high-energy gamma-ray colors of the HESS sources that are also detected by Fermi. In stellar astronomy, tracing optical colors against each other gives a rather robust classification of different star types without having to do (more ambitious) spectroscopy. In the HESS-FERMI catalogue there is not much spectroscopic information available, but the different fluxes in F1—F5 coming from the 3FGL part can be used to eventually discriminate different sub-samples of the catalogue. Since a color is basically an observed flux ratio between two bands, constructing a color-color diagram has the great advantage to be independent of the distance to the objects.\n",
    "\n",
    "The “color-color” diagram to be computed involves the following high-energy gamma-ray fluxes as measured by Fermi-LAT:\n",
    "- F1: flux over 100 – 300 MeV\n",
    "- F2: flux over 300 - 1000 MeV\n",
    "- F3: flux over 1 - 3 GeV\n",
    "- F4: flux over 3 - 10 GeV\n",
    "- F5: flux over 10 - 100 GeV\n"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Merge all the tables in one, but keeping their origin by adding a column with name **Source**. Add a column for the object type **TYPE**. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 29,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Create a column with name Source to know  which will contain types as \"All\" for FERMI,\n",
    "FERMI[\"Source\"] = \"FGL3\"\n",
    "hess_simbad_fermi[\"Source\"] = \"HESS-Simbad-3FGL\"\n",
    "hess_simbad_fermi_AGN[\"Source\"] = \"AGNs-3LAC\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 30,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Create a column with name TYPE which will contain types as \"All\" for FERMI,\n",
    "# Have to change to str since OTYPE is of object type\n",
    "FERMI[\"TYPE\"] = \"ALL\"\n",
    "hess_simbad_fermi[\"TYPE\"] = hess_simbad_fermi[\"OTYPE\"].astype(str)\n",
    "hess_simbad_fermi_AGN[\"TYPE\"] = \"AGN\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 31,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Merge the tables vertically using vstack\n",
    "Data = vstack(\n",
    "    [FERMI, hess_simbad_fermi, hess_simbad_fermi_AGN],\n",
    "    metadata_conflicts=\"silent\",\n",
    ")"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 32,
   "metadata": {},
   "outputs": [],
   "source": [
    "# Create two new columns with the flux ratios\n",
    "Data[\"F2_F1\"] = Data[\"F2\"] / Data[\"F1\"]\n",
    "Data[\"F4_F3\"] = Data[\"F4\"] / Data[\"F3\"]"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Save the file into for instance csv format and into a Panda kind of table to be able to use Plotly"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 33,
   "metadata": {
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "# Write Table to csv format and to panda format\n",
    "Data.write(\"Data\" / Path(\"Data_FERMI-HESS-SIMBAD-AGN.csv\"), overwrite=True)\n",
    "Data = Data.to_pandas()"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "And now lets plot using Plotly:\n",
    "- Flux ratios F2/F1 vs F4/F3\n",
    "- In a log. scale \n",
    "- Color coded according to the Source \n",
    "- Using fancy markers \n",
    "- Adding a legend"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 34,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/vnd.plotly.v1+json": {
       "config": {
        "plotlyServerURL": "https://plot.ly"
       },
       "data": [
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    "    Data,\n",
    "    x=\"F2_F1\",\n",
    "    y=\"F4_F3\",\n",
    "    log_x=True,\n",
    "    log_y=True,\n",
    "    color=\"Source\",\n",
    "    hover_name=\"TYPE\",\n",
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    "fig.update_traces(\n",
    "    marker={\"size\": 12, \"line\": {\"width\": 2, \"color\": \"DarkSlateGrey\"}},\n",
    "    selector={\"mode\": \"markers\"},\n",
    ")\n",
    "fig.show()"
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   "metadata": {},
   "source": [
    "Note that when you move around with the mouse you get the values for each of the sources. You can activate or deactivate a type of Source in the plot by selecting it in the legend. You can zoom in and out, you can export as a png... and plenty more. Play a little bit with it. \n",
    "\n",
    "Do the same as before but now color coded by object type. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 35,
   "metadata": {},
   "outputs": [
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     "metadata": {},
     "output_type": "display_data"
    }
   ],
   "source": [
    "# Plot same thing but color coded by the TYPE of object\n",
    "fig = px.scatter(Data, \"F2_F1\", y=\"F4_F3\", log_x=True, log_y=True, color=\"TYPE\")\n",
    "fig.update_traces(\n",
    "    marker={\"size\": 12, \"line\": {\"width\": 2, \"color\": \"DarkSlateGrey\"}},\n",
    "    selector={\"mode\": \"markers\"},\n",
    ")\n",
    "fig.show()"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "## Step #5 – Display the location of interesting sources and search multi-wavelength data around them\n",
    "\n",
    "*How to obtain multi-wavelength images for the source you are interested in.* \n",
    "\n",
    "After isolating the 5 SIMBAD-confirmed BL Lac objects on the gamma-ray “color-color” diagram, this last step focuses on one particular object: **PKS 2155-304, a peculiar BL Lac object known to be very variable on a wide spectral range and to show recurrent outbursts**. A BL Lac object is a sub-type of active galactic nuclei, where the central engine around the accreting supermassive black hole launches magnetized, ballistic jets that reach out to kiloparsec scales while being nearly aligned with the line of sight of the observer. The emission from the jets is modeled as relativistically beamed synchrotron-self-Compton (SSC) emission produced in the hot plasma of the ejected jet material. The very hot electrons produce synchrotron emission that peaks in the radio band and then the very same electrons comptonize the synchrotron photons and up-scatter them to gamma-rays and beyond. However, in reality the question of the seed photons and the structure of the jet are still under investigation. A simple SSC interpretation of the broad band spectrum is challenged by the partially correlated variability seen between different spectral bands.\n",
    "\n",
    "Broad-band spectrum reaching from the radio to the high-energy band\n",
    " (H.E.S.S., Fermi-LAT collaborations, ApJ 696, L150)\n",
    " \n",
    "![SED](Data/images/SED.png)\n",
    "\n",
    "In the following, this tutorial shows how to obtain multi-waveband imaging for this source (PKS 2155-304).\n",
    "\n",
    "Now, let's plot again AladinLite with the catalog of AGNs on top on the Fermi image and centering around PKS 2155-30 and setting a field of view of 10 deg."
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 36,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "application/vnd.jupyter.widget-view+json": {
       "model_id": "5814d6dd6f0945acbdc21a670a3979d5",
       "version_major": 2,
       "version_minor": 0
      },
      "text/plain": [
       "Aladin(fov=10.0, options=['allow_full_zoomout', 'coo_frame', 'fov', 'full_screen', 'log', 'overlay_survey', 'o…"
      ]
     },
     "execution_count": 36,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "object_name = \"PKS 2155-304\"\n",
    "aladin = Aladin(target=object_name, survey=\"P/Fermi/color\", fov=10)\n",
    "aladin"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 37,
   "metadata": {},
   "outputs": [],
   "source": [
    "aladin.add_table(hess_simbad_fermi)\n",
    "aladin.add_table(hess_simbad_fermi_AGN)"
   ]
  },
  {
   "attachments": {},
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "You can now see a marker on the source. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 38,
   "metadata": {
    "scrolled": true,
    "tags": [
     "output_scroll"
    ]
   },
   "outputs": [
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       "<div><i>Table length=1301</i>\n",
       "<table id=\"table140188978161088\" class=\"table-striped table-bordered table-condensed\">\n",
       "<thead><tr><th>_RAJ2000</th><th>_DEJ2000</th><th>_tabname</th><th>_ID</th><th>_tab1_29</th><th>_tab1_30</th><th>sed_freq</th><th>sed_flux</th><th>sed_eflux</th><th>sed_filter</th><th>nufnu</th><th>lambda</th></tr></thead>\n",
       "<thead><tr><th>deg</th><th>deg</th><th></th><th></th><th>d</th><th></th><th>GHz</th><th>Jy</th><th>Jy</th><th></th><th></th><th></th></tr></thead>\n",
       "<thead><tr><th>float64</th><th>float64</th><th>str32</th><th>str64</th><th>float64</th><th>float64</th><th>float64</th><th>float32</th><th>float32</th><th>str32</th><th>float64</th><th>float64</th></tr></thead>\n",
       "<tr><td>329.716940600</td><td>-30.225596400</td><td>I/289/out</td><td>2UCAC=19300255&amp;-c=329.7169406 -30.2255964,eq=J2000&amp;-c.rs=0.004</td><td>--</td><td>0.0</td><td>138550</td><td>0.0597</td><td>--</td><td>2MASS:Ks</td><td>8.271435142867267e-14</td><td>21652.83291230603</td></tr>\n",
       "<tr><td>329.716940600</td><td>-30.225596400</td><td>I/289/out</td><td>2UCAC=19300255&amp;-c=329.7169406 -30.2255964,eq=J2000&amp;-c.rs=0.004</td><td>--</td><td>0.0</td><td>181750</td><td>0.0524</td><td>--</td><td>2MASS:H</td><td>9.523700071498752e-14</td><td>16506.189821182943</td></tr>\n",
       "<tr><td>329.716940600</td><td>-30.225596400</td><td>I/289/out</td><td>2UCAC=19300255&amp;-c=329.7169406 -30.2255964,eq=J2000&amp;-c.rs=0.004</td><td>--</td><td>0.0</td><td>241960</td><td>0.0435</td><td>--</td><td>2MASS:J</td><td>1.0525259697139263e-13</td><td>12398.743593982477</td></tr>\n",
       "<tr><td>329.716940600</td><td>-30.225596400</td><td>I/297/out</td><td>NOMAD1===0597-1038713&amp;-c=329.7169406 -30.2255964,eq=J2000&amp;-c.rs=</td><td>--</td><td>0.0</td><td>138550</td><td>0.0597</td><td>--</td><td>2MASS:Ks</td><td>8.271435142867267e-14</td><td>21652.83291230603</td></tr>\n",
       "<tr><td>329.716940600</td><td>-30.225596400</td><td>I/297/out</td><td>NOMAD1===0597-1038713&amp;-c=329.7169406 -30.2255964,eq=J2000&amp;-c.rs=</td><td>--</td><td>0.0</td><td>181750</td><td>0.0524</td><td>--</td><td>2MASS:H</td><td>9.523700071498752e-14</td><td>16506.189821182943</td></tr>\n",
       "<tr><td>329.716940600</td><td>-30.225596400</td><td>I/297/out</td><td>NOMAD1===0597-1038713&amp;-c=329.7169406 -30.2255964,eq=J2000&amp;-c.rs=</td><td>--</td><td>0.0</td><td>241960</td><td>0.0435</td><td>--</td><td>2MASS:J</td><td>1.0525259697139263e-13</td><td>12398.743593982477</td></tr>\n",
       "<tr><td>329.716983000</td><td>-30.225589000</td><td>I/305/out</td><td>GSC2.3===SCJS000019&amp;-c=329.716983 -30.225589,eq=J2000&amp;-c.rs=0.00</td><td>--</td><td>0.0</td><td>382540</td><td>0.0607</td><td>0.024</td><td>POSS-II:i</td><td>2.3220177744627e-13</td><td>7842.317143305276</td></tr>\n",
       "<tr><td>329.716983000</td><td>-30.225589000</td><td>I/305/out</td><td>GSC2.3===SCJS000019&amp;-c=329.716983 -30.225589,eq=J2000&amp;-c.rs=0.00</td><td>--</td><td>0.0</td><td>468430</td><td>0.0305</td><td>0.012</td><td>POSS-II:F</td><td>1.4287115160543472e-13</td><td>6404.372051320368</td></tr>\n",
       "<tr><td>329.716983000</td><td>-30.225589000</td><td>I/305/out</td><td>GSC2.3===SCJS000019&amp;-c=329.716983 -30.225589,eq=J2000&amp;-c.rs=0.00</td><td>--</td><td>0.0</td><td>640580</td><td>0.0305</td><td>0.0088</td><td>POSS-II:J</td><td>1.9537690219543875e-13</td><td>4683.255799431765</td></tr>\n",
       "<tr><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td><td>...</td></tr>\n",
       "<tr><td>329.716916700</td><td>-30.225611100</td><td>J/other/NewA/11.27/table1</td><td>recno=468</td><td>--</td><td>0.0</td><td>138550</td><td>0.0597</td><td>0.0013</td><td>2MASS:Ks</td><td>8.271435142867267e-14</td><td>21652.83291230603</td></tr>\n",
       "<tr><td>329.716916700</td><td>-30.225611100</td><td>J/other/NewA/11.27/table1</td><td>recno=468</td><td>--</td><td>0.0</td><td>181750</td><td>0.0524</td><td>0.0013</td><td>2MASS:H</td><td>9.523700071498752e-14</td><td>16506.189821182943</td></tr>\n",
       "<tr><td>329.716916700</td><td>-30.225611100</td><td>J/other/NewA/11.27/table1</td><td>recno=468</td><td>--</td><td>0.0</td><td>241960</td><td>0.0435</td><td>0.0011</td><td>2MASS:J</td><td>1.0525259697139263e-13</td><td>12398.743593982477</td></tr>\n",
       "<tr><td>329.716666700</td><td>-30.225555600</td><td>J/other/NewA/11.557/BLLac</td><td>recno=259</td><td>--</td><td>0.0</td><td>138550</td><td>0.0597</td><td>--</td><td>2MASS:Ks</td><td>8.271435142867267e-14</td><td>21652.83291230603</td></tr>\n",
       "<tr><td>329.716666700</td><td>-30.225555600</td><td>J/other/NewA/11.557/BLLac</td><td>recno=259</td><td>--</td><td>0.0</td><td>181750</td><td>0.0524</td><td>--</td><td>2MASS:H</td><td>9.523700071498752e-14</td><td>16506.189821182943</td></tr>\n",
       "<tr><td>329.716666700</td><td>-30.225555600</td><td>J/other/NewA/11.557/BLLac</td><td>recno=259</td><td>--</td><td>0.0</td><td>241960</td><td>0.0435</td><td>--</td><td>2MASS:J</td><td>1.0525259697139263e-13</td><td>12398.743593982477</td></tr>\n",
       "<tr><td>329.716916700</td><td>-30.225583300</td><td>J/other/NewA/16.503/table1</td><td>recno=765</td><td>--</td><td>0.0</td><td>138550</td><td>0.0597</td><td>0.0013</td><td>2MASS:Ks</td><td>8.271435142867267e-14</td><td>21652.83291230603</td></tr>\n",
       "<tr><td>329.716916700</td><td>-30.225583300</td><td>J/other/NewA/16.503/table1</td><td>recno=765</td><td>--</td><td>0.0</td><td>181750</td><td>0.0524</td><td>0.0013</td><td>2MASS:H</td><td>9.523700071498752e-14</td><td>16506.189821182943</td></tr>\n",
       "<tr><td>329.716916700</td><td>-30.225583300</td><td>J/other/NewA/16.503/table1</td><td>recno=765</td><td>--</td><td>0.0</td><td>241960</td><td>0.0435</td><td>0.0011</td><td>2MASS:J</td><td>1.0525259697139263e-13</td><td>12398.743593982477</td></tr>\n",
       "<tr><td>329.716938100</td><td>-30.225588300</td><td>J/other/AstBu/70.264/table</td><td>recno=784</td><td>--</td><td>0.0</td><td>4.8</td><td>0.492</td><td>0.061</td><td>:=4.8GHz</td><td>2.3616000652313235e-17</td><td>625000000.0</td></tr>\n",
       "</table></div>"
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       "<Table length=1301>\n",
       "   _RAJ2000      _DEJ2000   ...         nufnu                lambda      \n",
       "     deg           deg      ...                                          \n",
       "   float64       float64    ...        float64              float64      \n",
       "------------- ------------- ... ---------------------- ------------------\n",
       "329.716940600 -30.225596400 ...  8.271435142867267e-14  21652.83291230603\n",
       "329.716940600 -30.225596400 ...  9.523700071498752e-14 16506.189821182943\n",
       "329.716940600 -30.225596400 ... 1.0525259697139263e-13 12398.743593982477\n",
       "329.716940600 -30.225596400 ...  8.271435142867267e-14  21652.83291230603\n",
       "329.716940600 -30.225596400 ...  9.523700071498752e-14 16506.189821182943\n",
       "329.716940600 -30.225596400 ... 1.0525259697139263e-13 12398.743593982477\n",
       "329.716983000 -30.225589000 ...    2.3220177744627e-13  7842.317143305276\n",
       "329.716983000 -30.225589000 ... 1.4287115160543472e-13  6404.372051320368\n",
       "329.716983000 -30.225589000 ... 1.9537690219543875e-13  4683.255799431765\n",
       "          ...           ... ...                    ...                ...\n",
       "329.716916700 -30.225611100 ...  8.271435142867267e-14  21652.83291230603\n",
       "329.716916700 -30.225611100 ...  9.523700071498752e-14 16506.189821182943\n",
       "329.716916700 -30.225611100 ... 1.0525259697139263e-13 12398.743593982477\n",
       "329.716666700 -30.225555600 ...  8.271435142867267e-14  21652.83291230603\n",
       "329.716666700 -30.225555600 ...  9.523700071498752e-14 16506.189821182943\n",
       "329.716666700 -30.225555600 ... 1.0525259697139263e-13 12398.743593982477\n",
       "329.716916700 -30.225583300 ...  8.271435142867267e-14  21652.83291230603\n",
       "329.716916700 -30.225583300 ...  9.523700071498752e-14 16506.189821182943\n",
       "329.716916700 -30.225583300 ... 1.0525259697139263e-13 12398.743593982477\n",
       "329.716938100 -30.225588300 ... 2.3616000652313235e-17        625000000.0"
      ]
     },
     "execution_count": 38,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "object_coordinates = SkyCoord.from_name(object_name)\n",
    "# here, were doing a query in a circle directly with an url.\n",
    "# this is what the ViZier module of astroquery does for us, see the precent tutorials\n",
    "# query_url = f\"https://vizier.cds.unistra.fr/viz-bin/sed?-c={object_coordinates.icrs.ra.deg},{object_coordinates.icrs.dec.deg}&-c.rs=5\"\n",
    "# query = Table.read(query_url, format=\"votable\")\n",
    "\n",
    "# The two precedent lines allow to do the query, but here we'll get it from the file system\n",
    "with Path.open(Path.cwd() / \"Data/J_ApJS_218_23/cone_search.pkl\", \"rb\") as file:\n",
    "    query = pickle.load(file)  # noqa: S301\n",
    "\n",
    "query"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 39,
   "metadata": {},
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    "query[\"nufnu\"] = query[\"sed_freq\"] * query[\"sed_flux\"] * 1e-17\n",
    "cc = 3e18\n",
    "query[\"lambda\"] = cc / query[\"sed_freq\"] / 1e9\n",
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    "    log_y=True,\n",
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    "    selector={\"mode\": \"markers\"},\n",
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    "\n",
    "fig.update_layout(\n",
    "    xaxis_title=\"Wavelength [Å]\",\n",
    "    yaxis_title=\"vFv\",\n",
    "    title={\n",
    "        \"text\": \"Based on VizieR photometric Viewer\",\n",
    "        \"y\": 0.95,\n",
    "        \"x\": 0.4,\n",
    "        \"xanchor\": \"center\",\n",
    "        \"yanchor\": \"top\",\n",
    "    },\n",
    ")\n",
    "\n",
    "fig.show()"
   ]
  }
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