Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Expand episode 1 to include experimental design & batch effects #71

Open
jdrnevich opened this issue Aug 2, 2023 · 2 comments
Open
Labels
help wanted Looking for Contributors type:enhancement Propose enhancement to the lesson

Comments

@jdrnevich
Copy link
Collaborator

Episode 1 does not cover what is listed in the questions, particularly "What are the different choices to consider when planning an RNA-seq experiment?". This episode needs to be greatly expanded to include information on experimental design considerations and batch effect avoidance in additional to sequencing and quantification options. See Harvard's excellent https://hbctraining.github.io/Intro-to-rnaseq-hpc-salmon-flipped/lessons/02_experimental_planning_considerations.html and credit them if re-using anything. I also have many slides/graphics that could be added.

@jdrnevich jdrnevich added help wanted Looking for Contributors type:enhancement Propose enhancement to the lesson labels Aug 2, 2023
@jdrnevich
Copy link
Collaborator Author

The ending Challenge to discuss RNA-Seq quantification went amazing well in-person, but I am afraid it will not go as well on-line.

@csoneson
Copy link
Collaborator

csoneson commented Sep 3, 2023

Some more content was added in #75 and #76

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
help wanted Looking for Contributors type:enhancement Propose enhancement to the lesson
Projects
None yet
Development

No branches or pull requests

2 participants